Gene annotation
Transcriptome id Sobic.009G040800.1
Synonym ATXPD, Sb09g003450, UVH6
Functional annotation helicase, putative, expressed
UniProt C5Z000
Pfam PF06733 PF13307 PF06777
Panther DB PTHR11472:SF1 PTHR11472
NCBI CDD -
KEGG Orthology K10844; ERCC2, DNA excision repair protein ERCC-2
Gene Ontology GO:0003677; DNA binding GO:0004003DNA helicase activity GO:0003676nucleic acid binding GO:0005524ATP binding GO:0006139nucleobase-containing compound metabolic process GO:0008026helicase activity GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G03190 : RAD3-like DNA-binding helicase protein
RAP-DB (Rice) LOC_Os05g05260.1 : helicase, putative, expressed
MaizeGDB (Corn) Zm00025a055385
Brachypodium KQK24205 , KQK24207 , KQK24206 , KQK24209 , KQK24208 , KQK11908 , KQK24210 , KQK07579
Barley HORVU1Hr1G019340.2 , HORVU1Hr1G019340.3 , HORVU1Hr1G019340.1 , HORVU1Hr1G019340.6 , HORVU1Hr1G019340.7 , HORVU1Hr1G019340.4 , HORVU1Hr1G019340.5 , HORVU1Hr1G019340.8 , HORVU1Hr1G019340.9 , HORVU1Hr1G019340.10 , HORVU1Hr1G019340.11 , HORVU1Hr1G019340.12 , HORVU1Hr1G019340.13 , HORVU1Hr1G019340.14 , HORVU1Hr1G019340.15 , HORVU1Hr1G019340.16 , HORVU1Hr1G019340.17 , HORVU1Hr1G019340.18 , HORVU1Hr1G019340.19 , HORVU1Hr1G019340.21 , HORVU1Hr1G019340.20 , HORVU1Hr1G019340.23 , HORVU1Hr1G019340.22
Wheat TraesCS1D02G089500 , TraesCS1A02G088200 , TraesCS1B02G107200
Populus PNT47960


JBrowse

Open New Page


cDNA sequences
Sobic.009G040800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
2 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
3 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
4 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
5 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
6 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
7 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
8 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
9 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
10 Sobic.009G108400 CAAX amino terminal protease family protein, putative, expressed K08658: RCE1, prenyl protein peptidase
11 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
12 Sobic.009G000400 expressed protein -
13 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
14 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
15 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
16 Sobic.002G115500 PHD finger protein, putative, expressed -
17 Sobic.010G074900 G protein coupled receptor, putative, expressed -
18 Sobic.001G526300 WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
19 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
20 Sobic.002G299100 SET domain containing protein, expressed -


Gene co-expression network
sample Sobic009G040800 Sobic009G040800 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic006G091000 Sobic006G091000 Sobic009G040800--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic010G278600--Sobic009G040800 Sobic009G074700 Sobic009G074700 Sobic010G278600--Sobic009G074700 Sobic002G408600 Sobic002G408600 Sobic010G278600--Sobic002G408600 Sobic004G285000 Sobic004G285000 Sobic010G278600--Sobic004G285000 Sobic004G236800 Sobic004G236800 Sobic010G278600--Sobic004G236800 Sobic010G278600--Sobic004G246100 Sobic010G278600--Sobic001G042200 Sobic006G131200 Sobic006G131200 Sobic010G278600--Sobic006G131200 Sobic001G393700 Sobic001G393700 Sobic010G278600--Sobic001G393700 Sobic006G091000--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic006G091000--Sobic005G178950 Sobic006G091000--Sobic004G353400 Sobic006G091000--Sobic005G040900 Sobic004G347100 Sobic004G347100 Sobic006G091000--Sobic004G347100 Sobic010G074900 Sobic010G074900 Sobic006G091000--Sobic010G074900 Sobic007G139400 Sobic007G139400 Sobic006G091000--Sobic007G139400 Sobic010G172400 Sobic010G172400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic005G040900--Sobic009G040800 Sobic005G040900--Sobic006G091000 Sobic005G040900--Sobic004G347100 Sobic005G040900--Sobic007G139400 Sobic005G040900--Sobic010G074900 Sobic003G205501 Sobic003G205501 Sobic005G040900--Sobic003G205501 Sobic004G345400 Sobic004G345400 Sobic005G040900--Sobic004G345400 Sobic001G472100 Sobic001G472100 Sobic005G040900--Sobic001G472100 Sobic005G040900--Sobic009G129600 Sobic008G058800 Sobic008G058800 Sobic009G129600--Sobic008G058800 Sobic010G077500 Sobic010G077500 Sobic009G129600--Sobic010G077500 Sobic001G346700 Sobic001G346700 Sobic009G129600--Sobic001G346700 Sobic006G248500 Sobic006G248500 Sobic009G129600--Sobic006G248500 Sobic009G129600--Sobic009G040800 Sobic002G063900 Sobic002G063900 Sobic009G129600--Sobic002G063900 Sobic008G100100 Sobic008G100100 Sobic009G129600--Sobic008G100100 Sobic002G357100 Sobic002G357100 Sobic009G129600--Sobic002G357100 Sobic002G148400 Sobic002G148400 Sobic009G129600--Sobic002G148400 Sobic001G369000 Sobic001G369000 Sobic001G335900--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic001G335900--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G335900--Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G335900--Sobic001G170100 Sobic003G240700 Sobic003G240700 Sobic001G335900--Sobic003G240700 Sobic009G229600 Sobic009G229600 Sobic001G335900--Sobic009G229600 Sobic009G049400 Sobic009G049400 Sobic001G335900--Sobic009G049400 Sobic007G120500 Sobic007G120500 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic006G116100 Sobic006G116100 Sobic008G149800--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic008G149800--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic008G149800--Sobic007G061700 Sobic002G357700 Sobic002G357700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 Sobic004G246100--Sobic008G149800 Sobic004G246100--Sobic008G153000 Sobic004G246100--Sobic007G061700 Sobic004G246100--Sobic002G063900 Sobic008G173100 Sobic008G173100 Sobic004G246100--Sobic008G173100 Sobic004G246100--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic004G246100--Sobic006G046700 Sobic009G137100 Sobic009G137100 Sobic004G246100--Sobic009G137100 Sobic002G260400 Sobic002G260400 Sobic004G246100--Sobic002G260400 Sobic001G042200--Sobic010G077500 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic001G042200--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic007G042900 Sobic007G042900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic004G353400--Sobic006G091000 Sobic004G353400--Sobic009G040800 Sobic004G353400--Sobic005G178950 Sobic004G042900 Sobic004G042900 Sobic004G353400--Sobic004G042900 Sobic007G053400 Sobic007G053400 Sobic004G353400--Sobic007G053400 Sobic001G100800 Sobic001G100800 Sobic004G353400--Sobic001G100800 Sobic007G016900 Sobic007G016900 Sobic004G353400--Sobic007G016900 Sobic006G144000 Sobic006G144000 Sobic004G353400--Sobic006G144000 Sobic002G299100 Sobic002G299100 Sobic004G353400--Sobic002G299100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.