Gene annotation
Transcriptome id Sobic.004G353400.1
Synonym Sb04g038010
Functional annotation leucine-rich repeat-containing protein 40, putative, expressed
UniProt C5XWM7
Pfam PF00560 PF13855
Panther DB PTHR23155
NCBI CDD KOG0472; Leucine-rich repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G15410 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os02g58030.1 : leucine-rich repeat-containing protein 40, putative, expressed
MaizeGDB (Corn) Zm00025a022657
Brachypodium KQK01572
Barley HORVU6Hr1G093360.11 , HORVU6Hr1G093360.10 , HORVU6Hr1G093360.13 , HORVU6Hr1G093360.12 , HORVU6Hr1G093360.15 , HORVU6Hr1G093360.14 , HORVU6Hr1G093360.8 , HORVU6Hr1G093360.5 , HORVU6Hr1G093360.4 , HORVU6Hr1G093360.7 , HORVU6Hr1G093360.1 , HORVU6Hr1G093360.3 , HORVU6Hr1G093360.2 , HORVU6Hr1G093540.3 , HORVU6Hr1G093540.1 , HORVU6Hr1G093540.5 , HORVU6Hr1G093540.4 , HORVU6Hr1G093540.7 , HORVU6Hr1G093540.6 , HORVU6Hr1G093540.9 , HORVU6Hr1G093540.8
Wheat TraesCS6B02G456300 , TraesCS6B02G456300 , TraesCS6A02G410200 , TraesCS6D02G393300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G353400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
2 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
3 Sobic.005G178950 - -
4 Sobic.004G042900 VIL2 protein, putative, expressed -
5 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -
6 Sobic.001G100800 mitochondrial carrier protein, putative, expressed -
7 Sobic.007G016900 OsFBL26 - F-box domain and LRR containing protein, expressed -
8 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.002G299100 SET domain containing protein, expressed -
10 Sobic.006G100000 pentatricopeptide, putative, expressed -
11 Sobic.009G059400 expressed protein -
12 Sobic.006G224300 APO, putative, expressed -
13 Sobic.003G393200 expressed protein -
14 Sobic.010G074900 G protein coupled receptor, putative, expressed -
15 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
17 Sobic.004G085300 Sel1 repeat domain containing protein, putative, expressed -
18 Sobic.004G026100 tRNA methyltransferase, putative, expressed K03439: trmB, METTL1, tRNA (guanine-N7-)-methyltransferase
19 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.003G413100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G353400 Sobic004G353400 Sobic006G091000 Sobic006G091000 Sobic004G353400--Sobic006G091000 Sobic009G040800 Sobic009G040800 Sobic004G353400--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic004G353400--Sobic005G178950 Sobic004G042900 Sobic004G042900 Sobic004G353400--Sobic004G042900 Sobic007G053400 Sobic007G053400 Sobic004G353400--Sobic007G053400 Sobic001G100800 Sobic001G100800 Sobic004G353400--Sobic001G100800 Sobic007G016900 Sobic007G016900 Sobic004G353400--Sobic007G016900 Sobic006G144000 Sobic006G144000 Sobic004G353400--Sobic006G144000 Sobic002G299100 Sobic002G299100 Sobic004G353400--Sobic002G299100 Sobic006G091000--Sobic009G040800 Sobic006G091000--Sobic005G178950 Sobic006G091000--Sobic004G353400 Sobic005G040900 Sobic005G040900 Sobic006G091000--Sobic005G040900 Sobic004G347100 Sobic004G347100 Sobic006G091000--Sobic004G347100 Sobic010G074900 Sobic010G074900 Sobic006G091000--Sobic010G074900 Sobic007G139400 Sobic007G139400 Sobic006G091000--Sobic007G139400 Sobic010G172400 Sobic010G172400 Sobic006G091000--Sobic010G172400 Sobic005G114400 Sobic005G114400 Sobic006G091000--Sobic005G114400 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic009G040800--Sobic006G091000 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic009G040800--Sobic004G353400 Sobic005G178950--Sobic006G091000 Sobic005G178950--Sobic001G042200 Sobic005G178950--Sobic009G040800 Sobic007G187600 Sobic007G187600 Sobic005G178950--Sobic007G187600 Sobic005G178950--Sobic002G299100 Sobic007G056500 Sobic007G056500 Sobic005G178950--Sobic007G056500 Sobic010G077500 Sobic010G077500 Sobic005G178950--Sobic010G077500 Sobic005G178950--Sobic010G074900 Sobic009G151200 Sobic009G151200 Sobic005G178950--Sobic009G151200 Sobic002G147100 Sobic002G147100 Sobic004G042900--Sobic002G147100 Sobic001G017200 Sobic001G017200 Sobic004G042900--Sobic001G017200 Sobic005G009100 Sobic005G009100 Sobic004G042900--Sobic005G009100 Sobic004G042900--Sobic004G353400 Sobic007G030100 Sobic007G030100 Sobic004G042900--Sobic007G030100 Sobic003G190200 Sobic003G190200 Sobic004G042900--Sobic003G190200 Sobic004G042900--Sobic006G144000 Sobic002G147200 Sobic002G147200 Sobic004G042900--Sobic002G147200 Sobic004G218300 Sobic004G218300 Sobic004G042900--Sobic004G218300 Sobic007G053400--Sobic006G091000 Sobic001G343000 Sobic001G343000 Sobic007G053400--Sobic001G343000 Sobic003G211700 Sobic003G211700 Sobic007G053400--Sobic003G211700 Sobic007G053400--Sobic004G353400 Sobic007G053400--Sobic010G074900 Sobic007G053400--Sobic010G172400 Sobic007G053400--Sobic007G139400 Sobic007G201000 Sobic007G201000 Sobic007G053400--Sobic007G201000 Sobic007G053400--Sobic009G040800 Sobic006G217200 Sobic006G217200 Sobic001G100800--Sobic006G217200 Sobic004G333700 Sobic004G333700 Sobic001G100800--Sobic004G333700 Sobic001G100800--Sobic009G040800 Sobic004G085300 Sobic004G085300 Sobic001G100800--Sobic004G085300 Sobic001G100800--Sobic004G353400 Sobic007G000800 Sobic007G000800 Sobic001G100800--Sobic007G000800 Sobic003G413100 Sobic003G413100 Sobic001G100800--Sobic003G413100 Sobic001G246500 Sobic001G246500 Sobic001G100800--Sobic001G246500 Sobic002G357700 Sobic002G357700 Sobic001G100800--Sobic002G357700 Sobic006G245900 Sobic006G245900 Sobic007G016900--Sobic006G245900 Sobic007G016900--Sobic007G187600 Sobic007G016900--Sobic003G413100 Sobic003G010900 Sobic003G010900 Sobic007G016900--Sobic003G010900 Sobic004G345400 Sobic004G345400 Sobic007G016900--Sobic004G345400 Sobic007G016900--Sobic001G042200 Sobic002G343200 Sobic002G343200 Sobic007G016900--Sobic002G343200 Sobic003G113300 Sobic003G113300 Sobic007G016900--Sobic003G113300 Sobic007G016900--Sobic009G040800 Sobic006G144000--Sobic001G017200 Sobic009G017200 Sobic009G017200 Sobic006G144000--Sobic009G017200 Sobic009G059400 Sobic009G059400 Sobic006G144000--Sobic009G059400 Sobic010G237650 Sobic010G237650 Sobic006G144000--Sobic010G237650 Sobic004G180900 Sobic004G180900 Sobic006G144000--Sobic004G180900 Sobic004G116600 Sobic004G116600 Sobic006G144000--Sobic004G116600 Sobic006G130200 Sobic006G130200 Sobic006G144000--Sobic006G130200 Sobic004G313300 Sobic004G313300 Sobic006G144000--Sobic004G313300 Sobic001G425000 Sobic001G425000 Sobic006G144000--Sobic001G425000 Sobic009G137100 Sobic009G137100 Sobic002G299100--Sobic009G137100 Sobic002G197100 Sobic002G197100 Sobic002G299100--Sobic002G197100 Sobic002G370900 Sobic002G370900 Sobic002G299100--Sobic002G370900 Sobic002G299100--Sobic004G246100 Sobic001G176200 Sobic001G176200 Sobic002G299100--Sobic001G176200 Sobic002G299100--Sobic009G040800 Sobic006G082900 Sobic006G082900 Sobic002G299100--Sobic006G082900 Sobic005G154500 Sobic005G154500 Sobic002G299100--Sobic005G154500 Sobic009G199500 Sobic009G199500 Sobic002G299100--Sobic009G199500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.