Gene annotation
Transcriptome id Sobic.004G085300.1,Sobic.004G085300.2
Synonym Sb04g007030
Functional annotation Sel1 repeat domain containing protein, putative, expressed
UniProt C5XXW7
Pfam PF08238
Panther DB PTHR11102
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25570 : binding
RAP-DB (Rice) LOC_Os02g10820.1 : Sel1 repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a034609
Brachypodium PNT66127 , KQJ93924
Barley HORVU6Hr1G037860.8 , HORVU6Hr1G037860.9 , HORVU6Hr1G037860.5 , HORVU6Hr1G037860.6 , HORVU6Hr1G037860.7 , HORVU6Hr1G037860.2 , HORVU6Hr1G037860.3 , HORVU6Hr1G037860.18 , HORVU6Hr1G037860.19 , HORVU6Hr1G037860.16 , HORVU6Hr1G037860.17 , HORVU6Hr1G037860.15 , HORVU6Hr1G037860.10 , HORVU6Hr1G037860.11
Wheat TraesCS6D02G168000 , TraesCS6D02G168000 , TraesCS6B02G209800 , TraesCS6A02G175300 , TraesCS6A02G175300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G151200 expressed protein -
2 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
3 Sobic.001G522400 FHA domain containing protein, putative, expressed -
4 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
5 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
6 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
7 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
8 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
9 Sobic.006G210200 zinc finger domain, LSD1 subclass family protein, expressed -
10 Sobic.001G424600 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
11 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
12 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
13 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
14 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
15 Sobic.005G178950 - -
16 Sobic.006G248500 expressed protein -
17 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
18 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
19 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.005G015900 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic004G085300 Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic004G085300--Sobic009G151200 Sobic002G223300 Sobic002G223300 Sobic004G085300--Sobic002G223300 Sobic001G522400 Sobic001G522400 Sobic004G085300--Sobic001G522400 Sobic002G268900 Sobic002G268900 Sobic004G085300--Sobic002G268900 Sobic004G086200 Sobic004G086200 Sobic004G085300--Sobic004G086200 Sobic002G421700 Sobic002G421700 Sobic004G085300--Sobic002G421700 Sobic002G259800 Sobic002G259800 Sobic004G085300--Sobic002G259800 Sobic004G285000 Sobic004G285000 Sobic004G085300--Sobic004G285000 Sobic006G210200 Sobic006G210200 Sobic004G085300--Sobic006G210200 Sobic006G248500 Sobic006G248500 Sobic009G151200--Sobic006G248500 Sobic009G151200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic009G151200--Sobic005G133500 Sobic009G151200--Sobic004G285000 Sobic001G424600 Sobic001G424600 Sobic009G151200--Sobic001G424600 Sobic009G151200--Sobic004G085300 Sobic008G100100 Sobic008G100100 Sobic009G151200--Sobic008G100100 Sobic009G151200--Sobic004G086200 Sobic004G156500 Sobic004G156500 Sobic009G151200--Sobic004G156500 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic002G223300--Sobic004G085300 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic002G223300--Sobic007G046900 Sobic002G223300--Sobic004G285000 Sobic002G223300--Sobic006G210200 Sobic002G050500 Sobic002G050500 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800 Sobic001G522400--Sobic002G268900 Sobic001G522400--Sobic004G085300 Sobic001G448100 Sobic001G448100 Sobic001G522400--Sobic001G448100 Sobic009G129600 Sobic009G129600 Sobic001G522400--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G522400--Sobic009G000400 Sobic002G079100 Sobic002G079100 Sobic001G522400--Sobic002G079100 Sobic001G522400--Sobic006G210200 Sobic001G090300 Sobic001G090300 Sobic001G522400--Sobic001G090300 Sobic007G000400 Sobic007G000400 Sobic001G522400--Sobic007G000400 Sobic002G033600 Sobic002G033600 Sobic002G268900--Sobic002G033600 Sobic002G268900--Sobic001G522400 Sobic010G237650 Sobic010G237650 Sobic002G268900--Sobic010G237650 Sobic002G268900--Sobic004G085300 Sobic002G268900--Sobic009G129600 Sobic004G347100 Sobic004G347100 Sobic002G268900--Sobic004G347100 Sobic007G139400 Sobic007G139400 Sobic002G268900--Sobic007G139400 Sobic003G343600 Sobic003G343600 Sobic002G268900--Sobic003G343600 Sobic001G346700 Sobic001G346700 Sobic002G268900--Sobic001G346700 Sobic001G346900 Sobic001G346900 Sobic004G086200--Sobic001G346900 Sobic004G086200--Sobic004G285000 Sobic001G134300 Sobic001G134300 Sobic004G086200--Sobic001G134300 Sobic001G245900 Sobic001G245900 Sobic004G086200--Sobic001G245900 Sobic001G306900 Sobic001G306900 Sobic004G086200--Sobic001G306900 Sobic010G096000 Sobic010G096000 Sobic004G086200--Sobic010G096000 Sobic010G279900 Sobic010G279900 Sobic004G086200--Sobic010G279900 Sobic001G246500 Sobic001G246500 Sobic004G086200--Sobic001G246500 Sobic010G065300 Sobic010G065300 Sobic004G086200--Sobic010G065300 Sobic008G034600 Sobic008G034600 Sobic002G421700--Sobic008G034600 Sobic008G117200 Sobic008G117200 Sobic002G421700--Sobic008G117200 Sobic001G454301 Sobic001G454301 Sobic002G421700--Sobic001G454301 Sobic002G061400 Sobic002G061400 Sobic002G421700--Sobic002G061400 Sobic005G015900 Sobic005G015900 Sobic002G421700--Sobic005G015900 Sobic008G129700 Sobic008G129700 Sobic002G421700--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G421700--Sobic007G116400 Sobic001G094000 Sobic001G094000 Sobic002G421700--Sobic001G094000 Sobic006G217200 Sobic006G217200 Sobic002G421700--Sobic006G217200 Sobic009G195200 Sobic009G195200 Sobic002G259800--Sobic009G195200 Sobic002G259800--Sobic001G306900 Sobic002G259800--Sobic005G015900 Sobic003G394300 Sobic003G394300 Sobic002G259800--Sobic003G394300 Sobic002G259800--Sobic006G248500 Sobic002G259800--Sobic001G246500 Sobic005G084100 Sobic005G084100 Sobic002G259800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G259800--Sobic002G423200 Sobic002G259800--Sobic004G156500 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic006G210200--Sobic002G050500 Sobic006G210200--Sobic001G454301 Sobic002G151600 Sobic002G151600 Sobic006G210200--Sobic002G151600 Sobic003G023400 Sobic003G023400 Sobic006G210200--Sobic003G023400 Sobic002G157200 Sobic002G157200 Sobic006G210200--Sobic002G157200 Sobic003G185250 Sobic003G185250 Sobic006G210200--Sobic003G185250 Sobic002G060450 Sobic002G060450 Sobic006G210200--Sobic002G060450 Sobic001G303675 Sobic001G303675 Sobic006G210200--Sobic001G303675 Sobic009G239351 Sobic009G239351 Sobic006G210200--Sobic009G239351
Octagon: transcription factors


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