Gene annotation
Transcriptome id Sobic.002G268900.1
Synonym Sb02g030290
Functional annotation flap endonuclease, putative, expressed
UniProt A0A1B6QDN7
Pfam PF00752 PF00867
Panther DB PTHR11081 PTHR11081:SF23
NCBI CDD KOG2519; 5'-3' exonuclease
KEGG Orthology K15338; GEN1, flap endonuclease GEN
Gene Ontology GO:0006281; DNA repair GO:0004518nuclease activity


Orthologs (automatic annotation)
TAIR AT1G01880 : 5\'-3\' exonuclease family protein
RAP-DB (Rice) LOC_Os09g35000.1 : flap endonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a014381 , Zm00025a047702
Brachypodium KQJ91102
Barley HORVU5Hr1G080240.11 , HORVU5Hr1G080240.10 , HORVU5Hr1G080240.13 , HORVU5Hr1G080240.12 , HORVU5Hr1G080240.14 , HORVU5Hr1G080240.5 , HORVU5Hr1G080240.4 , HORVU5Hr1G080240.2 , HORVU5Hr1G080240.9 , HORVU5Hr1G080240.8
Wheat TraesCS5D02G316900 , TraesCS5D02G316900 , TraesCS5A02G309900 , TraesCS5A02G309900 , TraesCS5B02G310700
Populus -


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cDNA sequences
Sobic.002G268900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G033600 Leucine Rich Repeat family protein, expressed -
2 Sobic.001G522400 FHA domain containing protein, putative, expressed -
3 Sobic.010G237650 - -
4 Sobic.004G085300 Sel1 repeat domain containing protein, putative, expressed -
5 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
6 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
7 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
8 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
10 Sobic.006G248500 expressed protein -
11 Sobic.006G144000 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
13 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
14 Sobic.001G472100 frigida, putative, expressed -
15 Sobic.009G059400 expressed protein -
16 Sobic.005G178950 - -
17 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
18 Sobic.003G299500 expressed protein -
19 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
20 Sobic.003G092066 - -


Gene co-expression network
sample Sobic002G268900 Sobic002G268900 Sobic002G033600 Sobic002G033600 Sobic002G268900--Sobic002G033600 Sobic001G522400 Sobic001G522400 Sobic002G268900--Sobic001G522400 Sobic010G237650 Sobic010G237650 Sobic002G268900--Sobic010G237650 Sobic004G085300 Sobic004G085300 Sobic002G268900--Sobic004G085300 Sobic009G129600 Sobic009G129600 Sobic002G268900--Sobic009G129600 Sobic004G347100 Sobic004G347100 Sobic002G268900--Sobic004G347100 Sobic007G139400 Sobic007G139400 Sobic002G268900--Sobic007G139400 Sobic003G343600 Sobic003G343600 Sobic002G268900--Sobic003G343600 Sobic001G346700 Sobic001G346700 Sobic002G268900--Sobic001G346700 Sobic002G033600--Sobic010G237650 Sobic002G033600--Sobic007G139400 Sobic002G033600--Sobic002G268900 Sobic001G049600 Sobic001G049600 Sobic002G033600--Sobic001G049600 Sobic002G061400 Sobic002G061400 Sobic002G033600--Sobic002G061400 Sobic007G188900 Sobic007G188900 Sobic002G033600--Sobic007G188900 Sobic010G199800 Sobic010G199800 Sobic002G033600--Sobic010G199800 Sobic009G102000 Sobic009G102000 Sobic002G033600--Sobic009G102000 Sobic002G334600 Sobic002G334600 Sobic002G033600--Sobic002G334600 Sobic001G522400--Sobic002G268900 Sobic001G522400--Sobic004G085300 Sobic001G448100 Sobic001G448100 Sobic001G522400--Sobic001G448100 Sobic001G522400--Sobic009G129600 Sobic009G000400 Sobic009G000400 Sobic001G522400--Sobic009G000400 Sobic002G079100 Sobic002G079100 Sobic001G522400--Sobic002G079100 Sobic006G210200 Sobic006G210200 Sobic001G522400--Sobic006G210200 Sobic001G090300 Sobic001G090300 Sobic001G522400--Sobic001G090300 Sobic007G000400 Sobic007G000400 Sobic001G522400--Sobic007G000400 Sobic010G237650--Sobic002G033600 Sobic003G092066 Sobic003G092066 Sobic010G237650--Sobic003G092066 Sobic010G237650--Sobic002G268900 Sobic006G144000 Sobic006G144000 Sobic010G237650--Sobic006G144000 Sobic010G237650--Sobic007G139400 Sobic006G215100 Sobic006G215100 Sobic010G237650--Sobic006G215100 Sobic010G073600 Sobic010G073600 Sobic010G237650--Sobic010G073600 Sobic005G128000 Sobic005G128000 Sobic010G237650--Sobic005G128000 Sobic010G237650--Sobic009G102000 Sobic009G151200 Sobic009G151200 Sobic004G085300--Sobic009G151200 Sobic002G223300 Sobic002G223300 Sobic004G085300--Sobic002G223300 Sobic004G085300--Sobic001G522400 Sobic004G085300--Sobic002G268900 Sobic004G086200 Sobic004G086200 Sobic004G085300--Sobic004G086200 Sobic002G421700 Sobic002G421700 Sobic004G085300--Sobic002G421700 Sobic002G259800 Sobic002G259800 Sobic004G085300--Sobic002G259800 Sobic004G285000 Sobic004G285000 Sobic004G085300--Sobic004G285000 Sobic004G085300--Sobic006G210200 Sobic008G058800 Sobic008G058800 Sobic009G129600--Sobic008G058800 Sobic010G077500 Sobic010G077500 Sobic009G129600--Sobic010G077500 Sobic009G129600--Sobic001G346700 Sobic006G248500 Sobic006G248500 Sobic009G129600--Sobic006G248500 Sobic009G040800 Sobic009G040800 Sobic009G129600--Sobic009G040800 Sobic002G063900 Sobic002G063900 Sobic009G129600--Sobic002G063900 Sobic008G100100 Sobic008G100100 Sobic009G129600--Sobic008G100100 Sobic002G357100 Sobic002G357100 Sobic009G129600--Sobic002G357100 Sobic002G148400 Sobic002G148400 Sobic009G129600--Sobic002G148400 Sobic004G347100--Sobic007G139400 Sobic004G347100--Sobic006G248500 Sobic006G091000 Sobic006G091000 Sobic004G347100--Sobic006G091000 Sobic009G044900 Sobic009G044900 Sobic004G347100--Sobic009G044900 Sobic005G040900 Sobic005G040900 Sobic004G347100--Sobic005G040900 Sobic004G347100--Sobic009G129600 Sobic004G347100--Sobic009G151200 Sobic004G347100--Sobic009G040800 Sobic003G336800 Sobic003G336800 Sobic004G347100--Sobic003G336800 Sobic007G139400--Sobic004G347100 Sobic007G139400--Sobic002G033600 Sobic007G139400--Sobic007G188900 Sobic007G139400--Sobic009G040800 Sobic007G088900 Sobic007G088900 Sobic007G139400--Sobic007G088900 Sobic007G139400--Sobic005G040900 Sobic007G139400--Sobic002G334600 Sobic007G139400--Sobic009G129600 Sobic003G354100 Sobic003G354100 Sobic007G139400--Sobic003G354100 Sobic003G140900 Sobic003G140900 Sobic003G343600--Sobic003G140900 Sobic003G343600--Sobic002G223300 Sobic005G072400 Sobic005G072400 Sobic003G343600--Sobic005G072400 Sobic003G343600--Sobic006G248500 Sobic003G343600--Sobic004G285000 Sobic003G343600--Sobic002G268900 Sobic005G198200 Sobic005G198200 Sobic003G343600--Sobic005G198200 Sobic006G278200 Sobic006G278200 Sobic003G343600--Sobic006G278200 Sobic003G343600--Sobic004G085300 Sobic001G346700--Sobic009G129600 Sobic001G346700--Sobic004G347100 Sobic003G415100 Sobic003G415100 Sobic001G346700--Sobic003G415100 Sobic001G346700--Sobic003G354100 Sobic001G346700--Sobic007G188900 Sobic001G346700--Sobic002G148400 Sobic001G346700--Sobic007G139400 Sobic001G346700--Sobic002G268900 Sobic001G346700--Sobic002G334600
Octagon: transcription factors


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