Gene annotation
Transcriptome id Sobic.002G033600.2,Sobic.002G033600.1
Synonym Sb02g002930
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1W0W223 , C5X9I5
Pfam PF00646
Panther DB PTHR32212 PTHR32212:SF74
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G56420 : F-box/RNI-like/FBD-like domains-containing protein
RAP-DB (Rice) LOC_Os11g32810.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G033600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G237650 - -
2 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
3 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
4 Sobic.001G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@squalene synthetase, putative, expressed K00801: farnesyl-diphosphate farnesyltransferase
5 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
6 Sobic.007G188900 AP2 domain containing protein, expressed -
7 Sobic.010G199800 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
8 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
9 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
10 Sobic.007G088900 expressed protein -
11 Sobic.004G242700 heat shock protein DnaJ, putative, expressed -
12 Sobic.004G347100 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
13 Sobic.003G229400 CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed -
14 Sobic.003G389800 nucleotide-sugar transporter family protein, putative, expressed -
15 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
16 Sobic.003G092066 - -
17 Sobic.004G085300 Sel1 repeat domain containing protein, putative, expressed -
18 Sobic.009G011500 expressed protein -
19 Sobic.004G233600 expressed protein -
20 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G033600 Sobic002G033600 Sobic010G237650 Sobic010G237650 Sobic002G033600--Sobic010G237650 Sobic007G139400 Sobic007G139400 Sobic002G033600--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic002G033600--Sobic002G268900 Sobic001G049600 Sobic001G049600 Sobic002G033600--Sobic001G049600 Sobic002G061400 Sobic002G061400 Sobic002G033600--Sobic002G061400 Sobic007G188900 Sobic007G188900 Sobic002G033600--Sobic007G188900 Sobic010G199800 Sobic010G199800 Sobic002G033600--Sobic010G199800 Sobic009G102000 Sobic009G102000 Sobic002G033600--Sobic009G102000 Sobic002G334600 Sobic002G334600 Sobic002G033600--Sobic002G334600 Sobic010G237650--Sobic002G033600 Sobic003G092066 Sobic003G092066 Sobic010G237650--Sobic003G092066 Sobic010G237650--Sobic002G268900 Sobic006G144000 Sobic006G144000 Sobic010G237650--Sobic006G144000 Sobic010G237650--Sobic007G139400 Sobic006G215100 Sobic006G215100 Sobic010G237650--Sobic006G215100 Sobic010G073600 Sobic010G073600 Sobic010G237650--Sobic010G073600 Sobic005G128000 Sobic005G128000 Sobic010G237650--Sobic005G128000 Sobic010G237650--Sobic009G102000 Sobic004G347100 Sobic004G347100 Sobic007G139400--Sobic004G347100 Sobic007G139400--Sobic002G033600 Sobic007G139400--Sobic007G188900 Sobic009G040800 Sobic009G040800 Sobic007G139400--Sobic009G040800 Sobic007G088900 Sobic007G088900 Sobic007G139400--Sobic007G088900 Sobic005G040900 Sobic005G040900 Sobic007G139400--Sobic005G040900 Sobic007G139400--Sobic002G334600 Sobic009G129600 Sobic009G129600 Sobic007G139400--Sobic009G129600 Sobic003G354100 Sobic003G354100 Sobic007G139400--Sobic003G354100 Sobic002G268900--Sobic002G033600 Sobic001G522400 Sobic001G522400 Sobic002G268900--Sobic001G522400 Sobic002G268900--Sobic010G237650 Sobic004G085300 Sobic004G085300 Sobic002G268900--Sobic004G085300 Sobic002G268900--Sobic009G129600 Sobic002G268900--Sobic004G347100 Sobic002G268900--Sobic007G139400 Sobic003G343600 Sobic003G343600 Sobic002G268900--Sobic003G343600 Sobic001G346700 Sobic001G346700 Sobic002G268900--Sobic001G346700 Sobic004G061900 Sobic004G061900 Sobic001G049600--Sobic004G061900 Sobic004G242700 Sobic004G242700 Sobic001G049600--Sobic004G242700 Sobic001G049600--Sobic002G033600 Sobic002G076400 Sobic002G076400 Sobic001G049600--Sobic002G076400 Sobic001G049600--Sobic007G188900 Sobic007G191100 Sobic007G191100 Sobic001G049600--Sobic007G191100 Sobic006G092800 Sobic006G092800 Sobic001G049600--Sobic006G092800 Sobic004G030700 Sobic004G030700 Sobic001G049600--Sobic004G030700 Sobic006G262600 Sobic006G262600 Sobic001G049600--Sobic006G262600 Sobic008G129700 Sobic008G129700 Sobic002G061400--Sobic008G129700 Sobic003G336800 Sobic003G336800 Sobic002G061400--Sobic003G336800 Sobic002G421700 Sobic002G421700 Sobic002G061400--Sobic002G421700 Sobic002G061400--Sobic010G199800 Sobic008G034600 Sobic008G034600 Sobic002G061400--Sobic008G034600 Sobic008G116500 Sobic008G116500 Sobic002G061400--Sobic008G116500 Sobic002G297800 Sobic002G297800 Sobic002G061400--Sobic002G297800 Sobic002G049000 Sobic002G049000 Sobic002G061400--Sobic002G049000 Sobic008G117200 Sobic008G117200 Sobic002G061400--Sobic008G117200 Sobic007G188900--Sobic002G061400 Sobic007G188900--Sobic008G129700 Sobic007G188900--Sobic007G139400 Sobic007G188900--Sobic007G088900 Sobic002G177400 Sobic002G177400 Sobic007G188900--Sobic002G177400 Sobic007G188900--Sobic002G334600 Sobic007G188900--Sobic003G354100 Sobic007G188900--Sobic009G129600 Sobic003G433500 Sobic003G433500 Sobic007G188900--Sobic003G433500 Sobic010G199800--Sobic002G061400 Sobic010G199800--Sobic003G336800 Sobic010G174800 Sobic010G174800 Sobic010G199800--Sobic010G174800 Sobic006G130200 Sobic006G130200 Sobic010G199800--Sobic006G130200 Sobic001G425000 Sobic001G425000 Sobic010G199800--Sobic001G425000 Sobic002G197100 Sobic002G197100 Sobic010G199800--Sobic002G197100 Sobic004G349900 Sobic004G349900 Sobic010G199800--Sobic004G349900 Sobic006G128800 Sobic006G128800 Sobic010G199800--Sobic006G128800 Sobic001G202266 Sobic001G202266 Sobic010G199800--Sobic001G202266 Sobic008G149800 Sobic008G149800 Sobic009G102000--Sobic008G149800 Sobic002G317400 Sobic002G317400 Sobic009G102000--Sobic002G317400 Sobic009G102000--Sobic009G040800 Sobic004G122900 Sobic004G122900 Sobic009G102000--Sobic004G122900 Sobic002G147100 Sobic002G147100 Sobic009G102000--Sobic002G147100 Sobic002G063900 Sobic002G063900 Sobic009G102000--Sobic002G063900 Sobic009G102000--Sobic009G129600 Sobic007G147400 Sobic007G147400 Sobic009G102000--Sobic007G147400 Sobic003G299500 Sobic003G299500 Sobic009G102000--Sobic003G299500 Sobic002G223300 Sobic002G223300 Sobic002G334600--Sobic002G223300 Sobic009G030300 Sobic009G030300 Sobic002G334600--Sobic009G030300 Sobic002G334600--Sobic007G139400 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G157200 Sobic002G157200 Sobic002G334600--Sobic002G157200
Octagon: transcription factors


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