Gene annotation
Transcriptome id Sobic.001G049600.1
Synonym ERG9, SQS1, Sb01g004550
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
squalene synthetase, putative, expressed
UniProt C5WW75
Pfam PF00494
Panther DB PTHR11626 PTHR11626:SF2
NCBI CDD -
KEGG Orthology K00801; farnesyl-diphosphate farnesyltransferase
Gene Ontology GO:0016740; transferase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G34640 : squalene synthase 1
RAP-DB (Rice) LOC_Os03g59040.1 : squalene synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a016531 , Zm00025a008634
Brachypodium KQK12608 , KQK12609 , PNT73952 , PNT73953 , KQK12612
Barley HORVU5Hr1G109300.10 , HORVU5Hr1G109300.11 , HORVU5Hr1G109300.7 , HORVU5Hr1G109300.8 , HORVU5Hr1G109300.9 , HORVU5Hr1G109300.4 , HORVU5Hr1G109300.5 , HORVU5Hr1G109300.6 , HORVU5Hr1G109300.1 , HORVU5Hr1G109300.2 , HORVU5Hr1G109300.3
Wheat TraesCS5A02G454500 , TraesCS5B02G464600 , TraesCS5D02G465000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
2 Sobic.004G242700 heat shock protein DnaJ, putative, expressed -
3 Sobic.002G033600 Leucine Rich Repeat family protein, expressed -
4 Sobic.002G076400 structural constituent of ribosome, putative, expressed -
5 Sobic.007G188900 AP2 domain containing protein, expressed -
6 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
7 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
8 Sobic.004G030700 expressed protein -
9 Sobic.006G262600 expressed protein -
10 Sobic.003G389800 nucleotide-sugar transporter family protein, putative, expressed -
11 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
12 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
13 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
14 Sobic.005G162600 zinc knuckle domain containing protein, expressed -
15 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
16 Sobic.003G380500 expressed protein -
17 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
18 Sobic.004G250700 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
19 Sobic.002G177400 expressed protein -
20 Sobic.003G015000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family


Gene co-expression network
sample Sobic001G049600 Sobic001G049600 Sobic004G061900 Sobic004G061900 Sobic001G049600--Sobic004G061900 Sobic004G242700 Sobic004G242700 Sobic001G049600--Sobic004G242700 Sobic002G033600 Sobic002G033600 Sobic001G049600--Sobic002G033600 Sobic002G076400 Sobic002G076400 Sobic001G049600--Sobic002G076400 Sobic007G188900 Sobic007G188900 Sobic001G049600--Sobic007G188900 Sobic007G191100 Sobic007G191100 Sobic001G049600--Sobic007G191100 Sobic006G092800 Sobic006G092800 Sobic001G049600--Sobic006G092800 Sobic004G030700 Sobic004G030700 Sobic001G049600--Sobic004G030700 Sobic006G262600 Sobic006G262600 Sobic001G049600--Sobic006G262600 Sobic004G061900--Sobic007G191100 Sobic008G129700 Sobic008G129700 Sobic004G061900--Sobic008G129700 Sobic006G129700 Sobic006G129700 Sobic004G061900--Sobic006G129700 Sobic008G117200 Sobic008G117200 Sobic004G061900--Sobic008G117200 Sobic009G030300 Sobic009G030300 Sobic004G061900--Sobic009G030300 Sobic004G345700 Sobic004G345700 Sobic004G061900--Sobic004G345700 Sobic002G177400 Sobic002G177400 Sobic004G061900--Sobic002G177400 Sobic001G094000 Sobic001G094000 Sobic004G061900--Sobic001G094000 Sobic004G027100 Sobic004G027100 Sobic004G061900--Sobic004G027100 Sobic004G242700--Sobic001G049600 Sobic001G247200 Sobic001G247200 Sobic004G242700--Sobic001G247200 Sobic007G139400 Sobic007G139400 Sobic004G242700--Sobic007G139400 Sobic004G242700--Sobic004G061900 Sobic006G215100 Sobic006G215100 Sobic004G242700--Sobic006G215100 Sobic004G242700--Sobic007G188900 Sobic004G242700--Sobic002G033600 Sobic010G237650 Sobic010G237650 Sobic004G242700--Sobic010G237650 Sobic004G242700--Sobic007G191100 Sobic002G033600--Sobic010G237650 Sobic002G033600--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic002G033600--Sobic002G268900 Sobic002G033600--Sobic001G049600 Sobic002G061400 Sobic002G061400 Sobic002G033600--Sobic002G061400 Sobic002G033600--Sobic007G188900 Sobic010G199800 Sobic010G199800 Sobic002G033600--Sobic010G199800 Sobic009G102000 Sobic009G102000 Sobic002G033600--Sobic009G102000 Sobic002G334600 Sobic002G334600 Sobic002G033600--Sobic002G334600 Sobic002G076400--Sobic007G191100 Sobic003G315332 Sobic003G315332 Sobic002G076400--Sobic003G315332 Sobic007G011400 Sobic007G011400 Sobic002G076400--Sobic007G011400 Sobic007G142050 Sobic007G142050 Sobic002G076400--Sobic007G142050 Sobic002G076400--Sobic008G117200 Sobic010G263800 Sobic010G263800 Sobic002G076400--Sobic010G263800 Sobic002G076400--Sobic002G177400 Sobic008G068800 Sobic008G068800 Sobic002G076400--Sobic008G068800 Sobic002G076400--Sobic004G061900 Sobic007G188900--Sobic002G061400 Sobic007G188900--Sobic008G129700 Sobic007G188900--Sobic007G139400 Sobic007G088900 Sobic007G088900 Sobic007G188900--Sobic007G088900 Sobic007G188900--Sobic002G177400 Sobic007G188900--Sobic002G334600 Sobic003G354100 Sobic003G354100 Sobic007G188900--Sobic003G354100 Sobic009G129600 Sobic009G129600 Sobic007G188900--Sobic009G129600 Sobic003G433500 Sobic003G433500 Sobic007G188900--Sobic003G433500 Sobic007G191100--Sobic004G061900 Sobic007G191100--Sobic002G076400 Sobic008G034600 Sobic008G034600 Sobic007G191100--Sobic008G034600 Sobic010G077600 Sobic010G077600 Sobic007G191100--Sobic010G077600 Sobic007G191100--Sobic010G263800 Sobic007G191100--Sobic007G011400 Sobic010G074500 Sobic010G074500 Sobic007G191100--Sobic010G074500 Sobic003G093600 Sobic003G093600 Sobic007G191100--Sobic003G093600 Sobic007G191100--Sobic008G117200 Sobic004G007300 Sobic004G007300 Sobic006G092800--Sobic004G007300 Sobic006G092800--Sobic004G345700 Sobic006G092800--Sobic007G088900 Sobic001G056200 Sobic001G056200 Sobic006G092800--Sobic001G056200 Sobic006G128800 Sobic006G128800 Sobic006G092800--Sobic006G128800 Sobic002G197100 Sobic002G197100 Sobic006G092800--Sobic002G197100 Sobic006G254600 Sobic006G254600 Sobic006G092800--Sobic006G254600 Sobic001G408700 Sobic001G408700 Sobic006G092800--Sobic001G408700 Sobic003G437500 Sobic003G437500 Sobic006G092800--Sobic003G437500 Sobic004G030700--Sobic007G011400 Sobic002G186000 Sobic002G186000 Sobic004G030700--Sobic002G186000 Sobic002G049000 Sobic002G049000 Sobic004G030700--Sobic002G049000 Sobic008G116500 Sobic008G116500 Sobic004G030700--Sobic008G116500 Sobic004G030700--Sobic001G094000 Sobic002G058300 Sobic002G058300 Sobic004G030700--Sobic002G058300 Sobic004G030700--Sobic010G074500 Sobic001G251700 Sobic001G251700 Sobic004G030700--Sobic001G251700 Sobic003G346000 Sobic003G346000 Sobic004G030700--Sobic003G346000 Sobic002G007200 Sobic002G007200 Sobic006G262600--Sobic002G007200 Sobic003G380500 Sobic003G380500 Sobic006G262600--Sobic003G380500 Sobic006G133600 Sobic006G133600 Sobic006G262600--Sobic006G133600 Sobic002G367300 Sobic002G367300 Sobic006G262600--Sobic002G367300 Sobic006G262600--Sobic001G049600 Sobic004G154600 Sobic004G154600 Sobic006G262600--Sobic004G154600 Sobic002G250400 Sobic002G250400 Sobic006G262600--Sobic002G250400 Sobic004G250700 Sobic004G250700 Sobic006G262600--Sobic004G250700 Sobic009G059600 Sobic009G059600 Sobic006G262600--Sobic009G059600
Octagon: transcription factors


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