Gene annotation
Transcriptome id Sobic.007G188900.2,Sobic.007G188900.1,Sobic.007G188900.5,Sobic.007G188900.3,Sobic.007G188900.6,Sobic.007G188900.4
Synonym
Functional annotation AP2 domain containing protein, expressed
UniProt A0A1B6PII8 , A0A1B6PIJ3 , A0A1Z5RAM8 , A0A1Z5RAS0
Pfam PF10250
Panther DB PTHR31741 PTHR31741:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52630 : O-fucosyltransferase family protein
RAP-DB (Rice) LOC_Os08g42550.6,LOC_Os08g42550.2,LOC_Os08g42550.5,LOC_Os08g42550.3,LOC_Os08g42550.4 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005316 , Zm00025a051943
Brachypodium KQJ99169
Barley HORVU7Hr1G055290.8 , HORVU7Hr1G055290.9 , HORVU7Hr1G055290.6 , HORVU7Hr1G055290.5 , HORVU7Hr1G055290.2 , HORVU7Hr1G055290.1 , HORVU7Hr1G055290.11 , HORVU7Hr1G055290.14 , HORVU7Hr1G055290.15 , HORVU7Hr1G055290.16 , HORVU7Hr1G055290.10 , HORVU7Hr1G055290.12 , HORVU7Hr1G055290.13 , HORVU7Hr1G055290.18 , HORVU7Hr1G055290.19 , HORVU7Hr1G055290.29 , HORVU7Hr1G055290.28 , HORVU7Hr1G055290.21 , HORVU7Hr1G055290.20 , HORVU7Hr1G055290.23 , HORVU7Hr1G055290.22 , HORVU7Hr1G055290.25 , HORVU7Hr1G055290.24 , HORVU7Hr1G055290.27 , HORVU7Hr1G055290.26
Wheat TraesCS7D02G264900 , TraesCS7D02G264900 , TraesCS7D02G264900 , TraesCS7D02G264900 , TraesCS7A02G264000 , TraesCS7A02G264000 , TraesCS7A02G264000 , TraesCS7B02G162000 , TraesCS7B02G162000 , TraesCS7B02G162000 , TraesCS7B02G162000
Populus -


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cDNA sequences
Sobic.007G188900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
2 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
3 Sobic.007G139400 OsFBL33 - F-box domain and LRR containing protein, expressed -
4 Sobic.007G088900 expressed protein -
5 Sobic.002G177400 expressed protein -
6 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
7 Sobic.003G354100 expressed protein -
8 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
9 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
10 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
11 Sobic.002G076400 structural constituent of ribosome, putative, expressed -
12 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
13 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
14 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
15 Sobic.001G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@squalene synthetase, putative, expressed K00801: farnesyl-diphosphate farnesyltransferase
16 Sobic.003G336800 expressed protein -
17 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
18 Sobic.002G335700 OsFBX252 - F-box domain containing protein, expressed -
19 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
20 Sobic.004G345700 TBC domain containing protein, expressed -


Gene co-expression network
sample Sobic007G188900 Sobic007G188900 Sobic002G061400 Sobic002G061400 Sobic007G188900--Sobic002G061400 Sobic008G129700 Sobic008G129700 Sobic007G188900--Sobic008G129700 Sobic007G139400 Sobic007G139400 Sobic007G188900--Sobic007G139400 Sobic007G088900 Sobic007G088900 Sobic007G188900--Sobic007G088900 Sobic002G177400 Sobic002G177400 Sobic007G188900--Sobic002G177400 Sobic002G334600 Sobic002G334600 Sobic007G188900--Sobic002G334600 Sobic003G354100 Sobic003G354100 Sobic007G188900--Sobic003G354100 Sobic009G129600 Sobic009G129600 Sobic007G188900--Sobic009G129600 Sobic003G433500 Sobic003G433500 Sobic007G188900--Sobic003G433500 Sobic002G061400--Sobic008G129700 Sobic003G336800 Sobic003G336800 Sobic002G061400--Sobic003G336800 Sobic002G421700 Sobic002G421700 Sobic002G061400--Sobic002G421700 Sobic010G199800 Sobic010G199800 Sobic002G061400--Sobic010G199800 Sobic008G034600 Sobic008G034600 Sobic002G061400--Sobic008G034600 Sobic008G116500 Sobic008G116500 Sobic002G061400--Sobic008G116500 Sobic002G297800 Sobic002G297800 Sobic002G061400--Sobic002G297800 Sobic002G049000 Sobic002G049000 Sobic002G061400--Sobic002G049000 Sobic008G117200 Sobic008G117200 Sobic002G061400--Sobic008G117200 Sobic008G129700--Sobic003G336800 Sobic004G061900 Sobic004G061900 Sobic008G129700--Sobic004G061900 Sobic008G129700--Sobic002G061400 Sobic008G129700--Sobic008G117200 Sobic008G129700--Sobic002G177400 Sobic007G185900 Sobic007G185900 Sobic008G129700--Sobic007G185900 Sobic008G078100 Sobic008G078100 Sobic008G129700--Sobic008G078100 Sobic003G248500 Sobic003G248500 Sobic008G129700--Sobic003G248500 Sobic004G088400 Sobic004G088400 Sobic008G129700--Sobic004G088400 Sobic004G347100 Sobic004G347100 Sobic007G139400--Sobic004G347100 Sobic002G033600 Sobic002G033600 Sobic007G139400--Sobic002G033600 Sobic007G139400--Sobic007G188900 Sobic009G040800 Sobic009G040800 Sobic007G139400--Sobic009G040800 Sobic007G139400--Sobic007G088900 Sobic005G040900 Sobic005G040900 Sobic007G139400--Sobic005G040900 Sobic007G139400--Sobic002G334600 Sobic007G139400--Sobic009G129600 Sobic007G139400--Sobic003G354100 Sobic006G092800 Sobic006G092800 Sobic007G088900--Sobic006G092800 Sobic004G345700 Sobic004G345700 Sobic007G088900--Sobic004G345700 Sobic004G007300 Sobic004G007300 Sobic007G088900--Sobic004G007300 Sobic001G028400 Sobic001G028400 Sobic007G088900--Sobic001G028400 Sobic003G437500 Sobic003G437500 Sobic007G088900--Sobic003G437500 Sobic004G013600 Sobic004G013600 Sobic007G088900--Sobic004G013600 Sobic007G191100 Sobic007G191100 Sobic007G088900--Sobic007G191100 Sobic007G088900--Sobic007G139400 Sobic007G088900--Sobic003G248500 Sobic002G177400--Sobic004G088400 Sobic009G030300 Sobic009G030300 Sobic002G177400--Sobic009G030300 Sobic002G177400--Sobic008G117200 Sobic007G008800 Sobic007G008800 Sobic002G177400--Sobic007G008800 Sobic002G177400--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G177400--Sobic007G116400 Sobic003G346000 Sobic003G346000 Sobic002G177400--Sobic003G346000 Sobic002G177400--Sobic004G061900 Sobic008G068800 Sobic008G068800 Sobic002G177400--Sobic008G068800 Sobic002G223300 Sobic002G223300 Sobic002G334600--Sobic002G223300 Sobic002G334600--Sobic009G030300 Sobic002G334600--Sobic007G139400 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G157200 Sobic002G157200 Sobic002G334600--Sobic002G157200 Sobic003G354100--Sobic003G433500 Sobic003G354100--Sobic004G013600 Sobic003G354100--Sobic003G132700 Sobic007G117100 Sobic007G117100 Sobic003G354100--Sobic007G117100 Sobic003G354100--Sobic007G188900 Sobic003G354100--Sobic007G139400 Sobic003G354100--Sobic006G092800 Sobic006G248500 Sobic006G248500 Sobic003G354100--Sobic006G248500 Sobic003G354100--Sobic009G129600 Sobic008G058800 Sobic008G058800 Sobic009G129600--Sobic008G058800 Sobic010G077500 Sobic010G077500 Sobic009G129600--Sobic010G077500 Sobic001G346700 Sobic001G346700 Sobic009G129600--Sobic001G346700 Sobic009G129600--Sobic006G248500 Sobic009G129600--Sobic009G040800 Sobic002G063900 Sobic002G063900 Sobic009G129600--Sobic002G063900 Sobic008G100100 Sobic008G100100 Sobic009G129600--Sobic008G100100 Sobic002G357100 Sobic002G357100 Sobic009G129600--Sobic002G357100 Sobic002G148400 Sobic002G148400 Sobic009G129600--Sobic002G148400 Sobic009G195200 Sobic009G195200 Sobic003G433500--Sobic009G195200 Sobic003G355000 Sobic003G355000 Sobic003G433500--Sobic003G355000 Sobic002G045400 Sobic002G045400 Sobic003G433500--Sobic002G045400 Sobic009G216000 Sobic009G216000 Sobic003G433500--Sobic009G216000 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic003G433500--Sobic006G248500 Sobic002G362300 Sobic002G362300 Sobic003G433500--Sobic002G362300 Sobic002G259800 Sobic002G259800 Sobic003G433500--Sobic002G259800
Octagon: transcription factors


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