Gene annotation
Transcriptome id Sobic.002G076400.1
Synonym MED33A, Sb02g006360, RFR1
Functional annotation structural constituent of ribosome, putative, expressed
UniProt A0A1B6Q9U6
Pfam -
Panther DB PTHR33739 PTHR33739:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23590 : REF4-related 1
RAP-DB (Rice) LOC_Os07g11000.1 : structural constituent of ribosome, putative, expressed
MaizeGDB (Corn) Zm00025a013410
Brachypodium KQK20375 , KQK20377 , KQK20376
Barley HORVU2Hr1G055830.39 , HORVU2Hr1G055830.38 , HORVU2Hr1G055830.31 , HORVU2Hr1G055830.30 , HORVU2Hr1G055830.33 , HORVU2Hr1G055830.32 , HORVU2Hr1G055830.35 , HORVU2Hr1G055830.34 , HORVU2Hr1G055830.37 , HORVU2Hr1G055830.36 , HORVU2Hr1G055830.9 , HORVU2Hr1G055830.8 , HORVU2Hr1G055830.7 , HORVU2Hr1G055830.6 , HORVU2Hr1G055830.5 , HORVU2Hr1G055830.4 , HORVU2Hr1G055830.3 , HORVU2Hr1G055830.2 , HORVU2Hr1G055830.1 , HORVU2Hr1G055830.28 , HORVU2Hr1G055830.29 , HORVU2Hr1G055830.26 , HORVU2Hr1G055830.27 , HORVU2Hr1G055830.24 , HORVU2Hr1G055830.25 , HORVU2Hr1G055830.22 , HORVU2Hr1G055830.23 , HORVU2Hr1G055830.20 , HORVU2Hr1G055830.21 , HORVU2Hr1G055830.53 , HORVU2Hr1G055830.52 , HORVU2Hr1G055830.51 , HORVU2Hr1G055830.50 , HORVU2Hr1G055830.55 , HORVU2Hr1G055830.54 , HORVU2Hr1G055830.48 , HORVU2Hr1G055830.49 , HORVU2Hr1G055830.40 , HORVU2Hr1G055830.41 , HORVU2Hr1G055830.42 , HORVU2Hr1G055830.43 , HORVU2Hr1G055830.44 , HORVU2Hr1G055830.45 , HORVU2Hr1G055830.46 , HORVU2Hr1G055830.47 , HORVU2Hr1G055830.17 , HORVU2Hr1G055830.16 , HORVU2Hr1G055830.15 , HORVU2Hr1G055830.14 , HORVU2Hr1G055830.13 , HORVU2Hr1G055830.12 , HORVU2Hr1G055830.11 , HORVU2Hr1G055830.10 , HORVU2Hr1G055830.19 , HORVU2Hr1G055830.18
Wheat TraesCS2D02G245200 , TraesCS2D02G245200 , TraesCS2A02G238200 , TraesCS2B02G258300 , TraesCS2B02G258300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
2 Sobic.003G315332 - K15421: secretion-regulating guanine nucleotide exchange factor
3 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
4 Sobic.007G142050 - -
5 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
6 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
7 Sobic.002G177400 expressed protein -
8 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
9 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
10 Sobic.001G094000 expressed protein -
11 Sobic.007G116400 - -
12 Sobic.002G283300 protein kinase family protein, putative, expressed -
13 Sobic.008G136200 spotted leaf 11, putative, expressed -
14 Sobic.003G204000 expressed protein -
15 Sobic.003G393300 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
16 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
17 Sobic.009G104300 - -
18 Sobic.002G039600 - -
19 Sobic.002G186000 CD2-binding protein-related, putative, expressed K13099: CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2
20 Sobic.010G074500 -(PubMedID : 26320239)@phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase


Gene co-expression network
sample Sobic002G076400 Sobic002G076400 Sobic007G191100 Sobic007G191100 Sobic002G076400--Sobic007G191100 Sobic003G315332 Sobic003G315332 Sobic002G076400--Sobic003G315332 Sobic007G011400 Sobic007G011400 Sobic002G076400--Sobic007G011400 Sobic007G142050 Sobic007G142050 Sobic002G076400--Sobic007G142050 Sobic008G117200 Sobic008G117200 Sobic002G076400--Sobic008G117200 Sobic010G263800 Sobic010G263800 Sobic002G076400--Sobic010G263800 Sobic002G177400 Sobic002G177400 Sobic002G076400--Sobic002G177400 Sobic008G068800 Sobic008G068800 Sobic002G076400--Sobic008G068800 Sobic004G061900 Sobic004G061900 Sobic002G076400--Sobic004G061900 Sobic007G191100--Sobic004G061900 Sobic007G191100--Sobic002G076400 Sobic008G034600 Sobic008G034600 Sobic007G191100--Sobic008G034600 Sobic010G077600 Sobic010G077600 Sobic007G191100--Sobic010G077600 Sobic007G191100--Sobic010G263800 Sobic007G191100--Sobic007G011400 Sobic010G074500 Sobic010G074500 Sobic007G191100--Sobic010G074500 Sobic003G093600 Sobic003G093600 Sobic007G191100--Sobic003G093600 Sobic007G191100--Sobic008G117200 Sobic004G169501 Sobic004G169501 Sobic003G315332--Sobic004G169501 Sobic003G315332--Sobic007G142050 Sobic003G315332--Sobic002G076400 Sobic003G315332--Sobic008G068800 Sobic006G129700 Sobic006G129700 Sobic003G315332--Sobic006G129700 Sobic001G543900 Sobic001G543900 Sobic003G315332--Sobic001G543900 Sobic003G315332--Sobic010G263800 Sobic003G204000 Sobic003G204000 Sobic003G315332--Sobic003G204000 Sobic007G089600 Sobic007G089600 Sobic003G315332--Sobic007G089600 Sobic001G094000 Sobic001G094000 Sobic007G011400--Sobic001G094000 Sobic007G205800 Sobic007G205800 Sobic007G011400--Sobic007G205800 Sobic002G157300 Sobic002G157300 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic002G157000 Sobic002G157000 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600 Sobic007G142050--Sobic007G089600 Sobic007G142050--Sobic008G068800 Sobic007G142050--Sobic003G315332 Sobic007G142050--Sobic004G169501 Sobic002G124200 Sobic002G124200 Sobic007G142050--Sobic002G124200 Sobic007G073400 Sobic007G073400 Sobic007G142050--Sobic007G073400 Sobic005G001900 Sobic005G001900 Sobic007G142050--Sobic005G001900 Sobic004G076732 Sobic004G076732 Sobic007G142050--Sobic004G076732 Sobic009G059600 Sobic009G059600 Sobic007G142050--Sobic009G059600 Sobic008G117200--Sobic010G263800 Sobic008G117200--Sobic008G034600 Sobic008G117200--Sobic001G094000 Sobic004G088400 Sobic004G088400 Sobic008G117200--Sobic004G088400 Sobic008G117200--Sobic002G177400 Sobic002G421700 Sobic002G421700 Sobic008G117200--Sobic002G421700 Sobic007G116400 Sobic007G116400 Sobic008G117200--Sobic007G116400 Sobic008G117200--Sobic007G011400 Sobic001G477800 Sobic001G477800 Sobic008G117200--Sobic001G477800 Sobic006G009400 Sobic006G009400 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic010G263800--Sobic002G077200 Sobic010G263800--Sobic002G313300 Sobic010G263800--Sobic002G157300 Sobic010G263800--Sobic007G205800 Sobic009G117400 Sobic009G117400 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic002G177400--Sobic004G088400 Sobic009G030300 Sobic009G030300 Sobic002G177400--Sobic009G030300 Sobic002G177400--Sobic008G117200 Sobic007G008800 Sobic007G008800 Sobic002G177400--Sobic007G008800 Sobic008G129700 Sobic008G129700 Sobic002G177400--Sobic008G129700 Sobic002G177400--Sobic007G116400 Sobic003G346000 Sobic003G346000 Sobic002G177400--Sobic003G346000 Sobic002G177400--Sobic004G061900 Sobic002G177400--Sobic008G068800 Sobic008G068800--Sobic007G116400 Sobic008G068800--Sobic007G142050 Sobic008G068800--Sobic003G204000 Sobic008G068800--Sobic004G169501 Sobic008G068800--Sobic009G059600 Sobic008G068800--Sobic003G315332 Sobic004G286900 Sobic004G286900 Sobic008G068800--Sobic004G286900 Sobic003G424100 Sobic003G424100 Sobic008G068800--Sobic003G424100 Sobic001G024200 Sobic001G024200 Sobic008G068800--Sobic001G024200 Sobic004G061900--Sobic007G191100 Sobic004G061900--Sobic008G129700 Sobic004G061900--Sobic006G129700 Sobic004G061900--Sobic008G117200 Sobic004G061900--Sobic009G030300 Sobic004G345700 Sobic004G345700 Sobic004G061900--Sobic004G345700 Sobic004G061900--Sobic002G177400 Sobic004G061900--Sobic001G094000 Sobic004G027100 Sobic004G027100 Sobic004G061900--Sobic004G027100
Octagon: transcription factors


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