Gene annotation
Transcriptome id Sobic.003G315332.1
Synonym -
Functional annotation -
UniProt A0A1W0VZW6
Pfam PF00415
Panther DB PTHR22870 PTHR22870:SF221
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology K15421; secretion-regulating guanine nucleotide exchange factor
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G27060 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os01g56990.1 : Regulator of chromosome condensation domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027304
Brachypodium KQK10043
Barley HORVU3Hr1G076310.10 , HORVU3Hr1G076310.11 , HORVU3Hr1G076310.1 , HORVU3Hr1G076310.2 , HORVU3Hr1G076310.3 , HORVU3Hr1G076310.4 , HORVU3Hr1G076310.5 , HORVU3Hr1G076310.6 , HORVU3Hr1G076310.7 , HORVU3Hr1G076310.8 , HORVU3Hr1G076310.9
Wheat TraesCS3D02G312300 , TraesCS3A02G319000 , TraesCS3B02G347100 , TraesCS3B02G347100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G169501 - -
2 Sobic.007G142050 - -
3 Sobic.002G076400 structural constituent of ribosome, putative, expressed -
4 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
5 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
6 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
7 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
8 Sobic.003G204000 expressed protein -
9 Sobic.007G089600 OsGrx_S15.1 - glutaredoxin subgroup II, expressed -
10 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
11 Sobic.007G116400 - -
12 Sobic.001G094000 expressed protein -
13 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
14 Sobic.007G094801 - -
15 Sobic.009G104300 - -
16 Sobic.001G477800 expressed protein -
17 Sobic.010G074500 -(PubMedID : 26320239)@phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
18 Sobic.002G181450 - -
19 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
20 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1


Gene co-expression network
sample Sobic003G315332 Sobic003G315332 Sobic004G169501 Sobic004G169501 Sobic003G315332--Sobic004G169501 Sobic007G142050 Sobic007G142050 Sobic003G315332--Sobic007G142050 Sobic002G076400 Sobic002G076400 Sobic003G315332--Sobic002G076400 Sobic008G068800 Sobic008G068800 Sobic003G315332--Sobic008G068800 Sobic006G129700 Sobic006G129700 Sobic003G315332--Sobic006G129700 Sobic001G543900 Sobic001G543900 Sobic003G315332--Sobic001G543900 Sobic010G263800 Sobic010G263800 Sobic003G315332--Sobic010G263800 Sobic003G204000 Sobic003G204000 Sobic003G315332--Sobic003G204000 Sobic007G089600 Sobic007G089600 Sobic003G315332--Sobic007G089600 Sobic004G169501--Sobic003G315332 Sobic004G169501--Sobic007G142050 Sobic004G169501--Sobic008G068800 Sobic007G116400 Sobic007G116400 Sobic004G169501--Sobic007G116400 Sobic008G117200 Sobic008G117200 Sobic004G169501--Sobic008G117200 Sobic004G169501--Sobic003G204000 Sobic001G267233 Sobic001G267233 Sobic004G169501--Sobic001G267233 Sobic002G181450 Sobic002G181450 Sobic004G169501--Sobic002G181450 Sobic004G169501--Sobic007G089600 Sobic007G142050--Sobic007G089600 Sobic007G142050--Sobic008G068800 Sobic007G142050--Sobic003G315332 Sobic007G142050--Sobic004G169501 Sobic002G124200 Sobic002G124200 Sobic007G142050--Sobic002G124200 Sobic007G073400 Sobic007G073400 Sobic007G142050--Sobic007G073400 Sobic005G001900 Sobic005G001900 Sobic007G142050--Sobic005G001900 Sobic004G076732 Sobic004G076732 Sobic007G142050--Sobic004G076732 Sobic009G059600 Sobic009G059600 Sobic007G142050--Sobic009G059600 Sobic007G191100 Sobic007G191100 Sobic002G076400--Sobic007G191100 Sobic002G076400--Sobic003G315332 Sobic007G011400 Sobic007G011400 Sobic002G076400--Sobic007G011400 Sobic002G076400--Sobic007G142050 Sobic002G076400--Sobic008G117200 Sobic002G076400--Sobic010G263800 Sobic002G177400 Sobic002G177400 Sobic002G076400--Sobic002G177400 Sobic002G076400--Sobic008G068800 Sobic004G061900 Sobic004G061900 Sobic002G076400--Sobic004G061900 Sobic008G068800--Sobic007G116400 Sobic008G068800--Sobic007G142050 Sobic008G068800--Sobic003G204000 Sobic008G068800--Sobic004G169501 Sobic008G068800--Sobic009G059600 Sobic008G068800--Sobic003G315332 Sobic004G286900 Sobic004G286900 Sobic008G068800--Sobic004G286900 Sobic003G424100 Sobic003G424100 Sobic008G068800--Sobic003G424100 Sobic001G024200 Sobic001G024200 Sobic008G068800--Sobic001G024200 Sobic006G129700--Sobic004G061900 Sobic006G129700--Sobic003G315332 Sobic007G094801 Sobic007G094801 Sobic006G129700--Sobic007G094801 Sobic006G129700--Sobic008G117200 Sobic005G162600 Sobic005G162600 Sobic006G129700--Sobic005G162600 Sobic006G129700--Sobic002G177400 Sobic006G129700--Sobic007G011400 Sobic008G034600 Sobic008G034600 Sobic006G129700--Sobic008G034600 Sobic009G030300 Sobic009G030300 Sobic006G129700--Sobic009G030300 Sobic001G477800 Sobic001G477800 Sobic001G543900--Sobic001G477800 Sobic002G313300 Sobic002G313300 Sobic001G543900--Sobic002G313300 Sobic004G112500 Sobic004G112500 Sobic001G543900--Sobic004G112500 Sobic002G001600 Sobic002G001600 Sobic001G543900--Sobic002G001600 Sobic006G009400 Sobic006G009400 Sobic001G543900--Sobic006G009400 Sobic002G166700 Sobic002G166700 Sobic001G543900--Sobic002G166700 Sobic005G130200 Sobic005G130200 Sobic001G543900--Sobic005G130200 Sobic001G272000 Sobic001G272000 Sobic001G543900--Sobic001G272000 Sobic010G248200 Sobic010G248200 Sobic001G543900--Sobic010G248200 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic010G263800--Sobic002G077200 Sobic010G263800--Sobic002G313300 Sobic002G157300 Sobic002G157300 Sobic010G263800--Sobic002G157300 Sobic007G205800 Sobic007G205800 Sobic010G263800--Sobic007G205800 Sobic009G117400 Sobic009G117400 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic003G204000--Sobic001G024200 Sobic003G204000--Sobic008G068800 Sobic004G212800 Sobic004G212800 Sobic003G204000--Sobic004G212800 Sobic008G116500 Sobic008G116500 Sobic003G204000--Sobic008G116500 Sobic003G204000--Sobic004G169501 Sobic003G204000--Sobic001G543900 Sobic003G204000--Sobic004G112500 Sobic002G297800 Sobic002G297800 Sobic003G204000--Sobic002G297800 Sobic003G204000--Sobic003G315332 Sobic007G089600--Sobic007G142050 Sobic010G139301 Sobic010G139301 Sobic007G089600--Sobic010G139301 Sobic007G089600--Sobic004G169501 Sobic007G089600--Sobic008G068800 Sobic007G089600--Sobic003G315332 Sobic009G104300 Sobic009G104300 Sobic007G089600--Sobic009G104300 Sobic007G089600--Sobic001G272000 SobicK009900 SobicK009900 Sobic007G089600--SobicK009900 Sobic007G089600--Sobic005G001900
Octagon: transcription factors


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