Gene annotation
Transcriptome id Sobic.005G149500.1,Sobic.005G149500.2
Synonym Sb05g021380
Functional annotation palmitoyltransferase TIP1, putative, expressed
UniProt A0A1B6PSN0 , A0A1Z5RIP5
Pfam PF12796 PF01529 PF01529 PF12796
Panther DB PTHR24161 PTHR24161:SF22 PTHR22883 PTHR22883:SF70
NCBI CDD KOG0509; Ankyrin repeat and DHHC-type Zn-finger domain containing proteins KOG0502Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) KOG441226S proteasome regulatory complex, subunit PSMD10
KEGG Orthology K18932; palmitoyltransferase
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G14255 : Ankyrin repeat family protein with DHHC zinc finger domain
RAP-DB (Rice) LOC_Os11g34860.1 : palmitoyltransferase TIP1, putative, expressed
MaizeGDB (Corn) Zm00025a042067 , Zm00025a015732
Brachypodium KQJ88236
Barley HORVU4Hr1G041970.1 , HORVU4Hr1G041970.2 , HORVU4Hr1G041970.20 , HORVU4Hr1G041970.21 , HORVU4Hr1G041970.22 , HORVU4Hr1G041970.23 , HORVU4Hr1G041970.24 , HORVU4Hr1G041970.25 , HORVU4Hr1G041970.26 , HORVU4Hr1G041970.9 , HORVU4Hr1G041970.3 , HORVU4Hr1G041970.5 , HORVU4Hr1G041970.7 , HORVU4Hr1G041970.6 , HORVU4Hr1G041970.13 , HORVU4Hr1G041970.12 , HORVU4Hr1G041970.19 , HORVU4Hr1G041970.18 , HORVU4Hr1G041970.15 , HORVU4Hr1G041970.14 , HORVU4Hr1G041970.17 , HORVU4Hr1G041970.16 , HORVU4Hr1G041970.11 , HORVU4Hr1G041970.10
Wheat TraesCS4A02G151100 , TraesCS4B02G152600 , TraesCS4D02G156300
Populus -


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cDNA sequences
Sobic.005G149500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
2 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
3 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
4 Sobic.004G196700 expressed protein -
5 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
6 Sobic.006G060100 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
7 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
8 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
9 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
10 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
11 Sobic.001G094000 expressed protein -
12 Sobic.001G477800 expressed protein -
13 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
14 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
15 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
16 Sobic.003G012500 expressed protein -
17 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
18 Sobic.003G268300 surp module family protein, putative, expressed -
19 Sobic.004G205600 bromodomain domain containing protein, expressed -
20 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit


Gene co-expression network
sample Sobic005G149500 Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic005G149500--Sobic003G187400 Sobic002G157300 Sobic002G157300 Sobic005G149500--Sobic002G157300 Sobic009G040700 Sobic009G040700 Sobic005G149500--Sobic009G040700 Sobic004G196700 Sobic004G196700 Sobic005G149500--Sobic004G196700 Sobic007G011400 Sobic007G011400 Sobic005G149500--Sobic007G011400 Sobic006G060100 Sobic006G060100 Sobic005G149500--Sobic006G060100 Sobic007G185900 Sobic007G185900 Sobic005G149500--Sobic007G185900 Sobic007G137900 Sobic007G137900 Sobic005G149500--Sobic007G137900 Sobic007G078000 Sobic007G078000 Sobic005G149500--Sobic007G078000 Sobic003G187400--Sobic002G157300 Sobic003G187400--Sobic005G149500 Sobic003G187400--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G187400--Sobic001G094000 Sobic006G173100 Sobic006G173100 Sobic003G187400--Sobic006G173100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic002G157300--Sobic007G011400 Sobic002G157300--Sobic005G149500 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100 Sobic009G040700--Sobic001G094000 Sobic009G040700--Sobic003G187400 Sobic009G040700--Sobic005G149500 Sobic009G040700--Sobic007G011400 Sobic009G040700--Sobic002G157300 Sobic001G477800 Sobic001G477800 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic009G040700--Sobic004G196700 Sobic008G078100 Sobic008G078100 Sobic009G040700--Sobic008G078100 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic004G196700--Sobic005G149500 Sobic004G196700--Sobic007G137900 Sobic004G196700--Sobic002G157300 Sobic004G196700--Sobic003G187400 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic004G196700--Sobic009G040700 Sobic007G011400--Sobic001G094000 Sobic007G205800 Sobic007G205800 Sobic007G011400--Sobic007G205800 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic007G011400--Sobic009G040700 Sobic002G157000 Sobic002G157000 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic008G034600 Sobic008G034600 Sobic007G011400--Sobic008G034600 Sobic006G060100--Sobic003G187400 Sobic003G268300 Sobic003G268300 Sobic006G060100--Sobic003G268300 Sobic006G060100--Sobic005G149500 Sobic003G176400 Sobic003G176400 Sobic006G060100--Sobic003G176400 Sobic006G060100--Sobic001G094000 Sobic003G422300 Sobic003G422300 Sobic006G060100--Sobic003G422300 Sobic006G080300 Sobic006G080300 Sobic006G060100--Sobic006G080300 Sobic006G060100--Sobic002G157300 Sobic006G060100--Sobic007G011400 Sobic007G185900--Sobic004G196700 Sobic007G185900--Sobic002G157300 Sobic007G185900--Sobic007G078000 Sobic007G185900--Sobic010G260500 Sobic007G185900--Sobic002G313300 Sobic008G054500 Sobic008G054500 Sobic007G185900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G185900--Sobic003G397800 Sobic007G185900--Sobic005G149500 Sobic007G185900--Sobic003G187400 Sobic001G251700 Sobic001G251700 Sobic007G137900--Sobic001G251700 Sobic007G137900--Sobic002G157300 Sobic007G137900--Sobic004G196700 Sobic003G200200 Sobic003G200200 Sobic007G137900--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic007G137900--Sobic003G170100 Sobic004G349900 Sobic004G349900 Sobic007G137900--Sobic004G349900 Sobic007G137900--Sobic005G149500 Sobic007G137900--Sobic007G011400 Sobic007G137900--Sobic002G157000 Sobic003G333600 Sobic003G333600 Sobic007G078000--Sobic003G333600 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic001G451000 Sobic001G451000 Sobic007G078000--Sobic001G451000 Sobic007G078000--Sobic006G082600
Octagon: transcription factors


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