Gene annotation
Transcriptome id Sobic.007G185900.1
Synonym Sb07g025570, ATARI8, ARI8
Functional annotation IBR domain containing protein, putative, expressed
UniProt C5YHJ7
Pfam PF01485
Panther DB PTHR11685 PTHR11685:SF154
NCBI CDD KOG1815; Predicted E3 ubiquitin ligase
KEGG Orthology K11968; ariadne-1
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT1G65430 : IBR domain-containing protein
RAP-DB (Rice) LOC_Os08g42740.3 : IBR domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a005335 , Zm00025a033615
Brachypodium KQJ91000 , KQJ91001 , KQJ99205
Barley HORVU7Hr1G056040.8 , HORVU7Hr1G056040.9 , HORVU7Hr1G056040.2 , HORVU7Hr1G056040.3 , HORVU7Hr1G056040.1 , HORVU7Hr1G056040.6 , HORVU7Hr1G056040.7 , HORVU7Hr1G056040.4 , HORVU7Hr1G056040.5 , HORVU7Hr1G056040.11 , HORVU7Hr1G056040.12 , HORVU7Hr1G056040.13 , HORVU5Hr1G078470.4 , HORVU5Hr1G078470.7 , HORVU5Hr1G078470.6 , HORVU5Hr1G078470.1 , HORVU5Hr1G078470.3 , HORVU5Hr1G078470.2 , HORVU7Hr1G056020.1 , HORVU7Hr1G056020.2 , HORVU7Hr1G056020.3 , HORVU7Hr1G056040.10 , HORVU7Hr1G056040.14
Wheat TraesCS7D02G267600 , TraesCS7D02G267600 , TraesCS7D02G267600 , TraesCS7D02G267600 , TraesCS5B02G297300 , TraesCS7B02G165100 , TraesCS7B02G165100 , TraesCS7B02G165100 , TraesCS7B02G165100 , TraesCS7A02G267200 , TraesCS7A02G267200 , TraesCS7A02G267200 , TraesCS7A02G267200 , TraesCS5A02G298200 , TraesCS5D02G305000
Populus -


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cDNA sequences
Sobic.007G185900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G196700 expressed protein -
2 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
3 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
4 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
5 Sobic.002G313300 bromodomain domain containing protein, expressed -
6 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
8 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
9 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
10 Sobic.006G080300 SET domain containing protein, expressed -
11 Sobic.001G206100 expressed protein -
12 Sobic.004G031700 expressed protein -
13 Sobic.001G477800 expressed protein -
14 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.008G078100 EDM2, putative, expressed -
16 Sobic.001G094000 expressed protein -
17 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
18 Sobic.009G083900 C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
19 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
20 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase


Gene co-expression network
sample Sobic007G185900 Sobic007G185900 Sobic004G196700 Sobic004G196700 Sobic007G185900--Sobic004G196700 Sobic002G157300 Sobic002G157300 Sobic007G185900--Sobic002G157300 Sobic007G078000 Sobic007G078000 Sobic007G185900--Sobic007G078000 Sobic010G260500 Sobic010G260500 Sobic007G185900--Sobic010G260500 Sobic002G313300 Sobic002G313300 Sobic007G185900--Sobic002G313300 Sobic008G054500 Sobic008G054500 Sobic007G185900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G185900--Sobic003G397800 Sobic005G149500 Sobic005G149500 Sobic007G185900--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic007G185900--Sobic003G187400 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic004G196700--Sobic005G149500 Sobic007G137900 Sobic007G137900 Sobic004G196700--Sobic007G137900 Sobic004G196700--Sobic002G157300 Sobic004G196700--Sobic003G187400 Sobic001G477800 Sobic001G477800 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic009G040700 Sobic009G040700 Sobic004G196700--Sobic009G040700 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic002G157300--Sobic010G260500 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic006G173100 Sobic006G173100 Sobic002G157300--Sobic006G173100 Sobic003G333600 Sobic003G333600 Sobic007G078000--Sobic003G333600 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic001G451000 Sobic001G451000 Sobic007G078000--Sobic001G451000 Sobic007G078000--Sobic006G082600 Sobic010G260500--Sobic002G157300 Sobic008G174300 Sobic008G174300 Sobic010G260500--Sobic008G174300 Sobic010G260500--Sobic007G078000 Sobic010G260500--Sobic007G185900 Sobic010G033400 Sobic010G033400 Sobic010G260500--Sobic010G033400 Sobic010G260500--Sobic001G451000 Sobic004G263900 Sobic004G263900 Sobic010G260500--Sobic004G263900 Sobic010G260500--Sobic005G149500 Sobic010G260500--Sobic003G187400 Sobic002G313300--Sobic001G477800 Sobic002G077200 Sobic002G077200 Sobic002G313300--Sobic002G077200 Sobic002G313300--Sobic007G011400 Sobic002G313300--Sobic010G263800 Sobic001G543900 Sobic001G543900 Sobic002G313300--Sobic001G543900 Sobic006G080300 Sobic006G080300 Sobic002G313300--Sobic006G080300 Sobic006G009400 Sobic006G009400 Sobic002G313300--Sobic006G009400 Sobic002G313300--Sobic007G185900 Sobic004G031700 Sobic004G031700 Sobic002G313300--Sobic004G031700 Sobic008G173900 Sobic008G173900 Sobic008G054500--Sobic008G173900 Sobic003G200200 Sobic003G200200 Sobic008G054500--Sobic003G200200 Sobic003G268300 Sobic003G268300 Sobic008G054500--Sobic003G268300 Sobic002G248400 Sobic002G248400 Sobic008G054500--Sobic002G248400 Sobic008G078100 Sobic008G078100 Sobic008G054500--Sobic008G078100 Sobic002G157000 Sobic002G157000 Sobic008G054500--Sobic002G157000 Sobic003G445400 Sobic003G445400 Sobic008G054500--Sobic003G445400 Sobic008G054500--Sobic007G185900 Sobic008G054500--Sobic003G397800 Sobic002G297200 Sobic002G297200 Sobic003G397800--Sobic002G297200 Sobic001G409600 Sobic001G409600 Sobic003G397800--Sobic001G409600 Sobic002G353600 Sobic002G353600 Sobic003G397800--Sobic002G353600 Sobic007G167500 Sobic007G167500 Sobic003G397800--Sobic007G167500 Sobic003G397800--Sobic003G445400 Sobic001G206100 Sobic001G206100 Sobic003G397800--Sobic001G206100 Sobic003G397800--Sobic007G185900 Sobic010G101800 Sobic010G101800 Sobic003G397800--Sobic010G101800 Sobic003G397800--Sobic008G054500 Sobic005G149500--Sobic003G187400 Sobic005G149500--Sobic002G157300 Sobic005G149500--Sobic009G040700 Sobic005G149500--Sobic004G196700 Sobic005G149500--Sobic007G011400 Sobic006G060100 Sobic006G060100 Sobic005G149500--Sobic006G060100 Sobic005G149500--Sobic007G185900 Sobic005G149500--Sobic007G137900 Sobic005G149500--Sobic007G078000 Sobic003G187400--Sobic002G157300 Sobic003G187400--Sobic005G149500 Sobic003G187400--Sobic009G040700 Sobic003G187400--Sobic001G094000 Sobic003G187400--Sobic006G173100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800
Octagon: transcription factors


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