Gene annotation
Transcriptome id Sobic.004G031700.3,Sobic.004G031700.2,Sobic.004G031700.1
Synonym Sb04g002740
Functional annotation expressed protein
UniProt C5XTW4
Pfam PF13639 PF00628 PF15870
Panther DB -
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase KOG1493Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G10930 : -
RAP-DB (Rice) LOC_Os12g10700.1 : expressed protein
MaizeGDB (Corn) Zm00025a035003
Brachypodium KQK09510 , PNT72726 , KQK09509
Barley -
Wheat TraesCS3B02G322600 , TraesCS3B02G322600 , TraesCS3B02G322600 , TraesCS3B02G322600 , TraesCS3B02G322600 , TraesCS3B02G322600 , TraesCS3B02G322600 , TraesCS3B02G322600 , TraesCS3B02G322600 , TraesCS3A02G287900 , TraesCS3A02G287900 , TraesCS3A02G287900 , TraesCS3D02G287700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
2 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
3 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
4 Sobic.001G477800 expressed protein -
5 Sobic.006G080300 SET domain containing protein, expressed -
6 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
7 Sobic.001G094000 expressed protein -
8 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
9 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
10 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
11 Sobic.001G464200 flap endonuclease, putative, expressed K10846: ERCC5, XPG, DNA excision repair protein ERCC-5
12 Sobic.002G313300 bromodomain domain containing protein, expressed -
13 Sobic.005G015900 dnaJ domain containing protein, expressed -
14 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
15 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
16 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
18 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
19 Sobic.006G032400 expressed protein -
20 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2


Gene co-expression network
sample Sobic004G031700 Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic004G031700--Sobic009G000500 Sobic003G445400 Sobic003G445400 Sobic004G031700--Sobic003G445400 Sobic001G544200 Sobic001G544200 Sobic004G031700--Sobic001G544200 Sobic001G477800 Sobic001G477800 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic006G128900 Sobic006G128900 Sobic004G031700--Sobic006G128900 Sobic001G094000 Sobic001G094000 Sobic004G031700--Sobic001G094000 Sobic001G511500 Sobic001G511500 Sobic004G031700--Sobic001G511500 Sobic002G158700 Sobic002G158700 Sobic004G031700--Sobic002G158700 Sobic009G000500--Sobic004G031700 Sobic009G000500--Sobic003G445400 Sobic002G320500 Sobic002G320500 Sobic009G000500--Sobic002G320500 Sobic009G000500--Sobic006G128900 Sobic006G133800 Sobic006G133800 Sobic009G000500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic003G445400--Sobic004G031700 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G445400--Sobic003G307000 Sobic003G445400--Sobic002G158700 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000 Sobic001G544200--Sobic004G031700 Sobic001G544200--Sobic001G477800 Sobic001G464200 Sobic001G464200 Sobic001G544200--Sobic001G464200 Sobic009G040700 Sobic009G040700 Sobic001G544200--Sobic009G040700 Sobic001G544200--Sobic001G511500 Sobic001G544200--Sobic006G128900 Sobic008G078100 Sobic008G078100 Sobic001G544200--Sobic008G078100 Sobic008G054500 Sobic008G054500 Sobic001G544200--Sobic008G054500 Sobic001G544200--Sobic001G094000 Sobic002G313300 Sobic002G313300 Sobic001G477800--Sobic002G313300 Sobic001G477800--Sobic004G031700 Sobic001G477800--Sobic001G094000 Sobic001G477800--Sobic001G544200 Sobic001G543900 Sobic001G543900 Sobic001G477800--Sobic001G543900 Sobic001G477800--Sobic006G080300 Sobic001G477800--Sobic009G040700 Sobic007G011400 Sobic007G011400 Sobic001G477800--Sobic007G011400 Sobic006G009400 Sobic006G009400 Sobic001G477800--Sobic006G009400 Sobic003G268300 Sobic003G268300 Sobic006G080300--Sobic003G268300 Sobic006G080300--Sobic004G031700 Sobic006G080300--Sobic001G094000 Sobic006G080300--Sobic001G477800 Sobic006G080300--Sobic002G313300 Sobic006G080300--Sobic001G206100 Sobic002G157000 Sobic002G157000 Sobic006G080300--Sobic002G157000 Sobic003G170100 Sobic003G170100 Sobic006G080300--Sobic003G170100 Sobic001G257300 Sobic001G257300 Sobic006G080300--Sobic001G257300 Sobic006G209850 Sobic006G209850 Sobic006G128900--Sobic006G209850 Sobic006G128900--Sobic001G511500 Sobic006G128900--Sobic004G031700 Sobic006G128900--Sobic009G000500 Sobic006G128900--Sobic001G090400 Sobic006G128900--Sobic003G445400 Sobic006G128900--Sobic003G268300 Sobic006G128900--Sobic001G477800 Sobic006G128900--Sobic002G157000 Sobic001G094000--Sobic007G011400 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic001G094000--Sobic004G031700 Sobic001G094000--Sobic006G080300 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic003G119000 Sobic003G119000 Sobic001G511500--Sobic003G119000 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic001G511500--Sobic003G445400 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic002G158700--Sobic004G031700 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000
Octagon: transcription factors


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