Gene annotation
Transcriptome id Sobic.001G544200.2,Sobic.001G544200.1
Synonym UVH1, RAD1, ATRAD1, Sb01g050650
Functional annotation endonuclease, putative, expressed
UniProt A0A1Z5SC87 , A0A1B6QRA4
Pfam PF02732
Panther DB PTHR10150
NCBI CDD KOG0442; Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4
KEGG Orthology K10848; ERCC4, DNA excision repair protein ERCC-4
Gene Ontology GO:0004518; nuclease activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G41150 : Restriction endonuclease, type II-like superfamily protein
RAP-DB (Rice) LOC_Os03g01100.1 : endonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a034930
Brachypodium KQK24186
Barley HORVU4Hr1G090160.2 , HORVU4Hr1G090210.2 , HORVU4Hr1G090210.1 , HORVU4Hr1G090160.1
Wheat TraesCS5A02G544900 , TraesCSU02G129000 , TraesCS4B02G378700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G544200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G031700 expressed protein -
2 Sobic.001G477800 expressed protein -
3 Sobic.001G464200 flap endonuclease, putative, expressed K10846: ERCC5, XPG, DNA excision repair protein ERCC-5
4 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
5 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
6 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
7 Sobic.008G078100 EDM2, putative, expressed -
8 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
9 Sobic.001G094000 expressed protein -
10 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
11 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
12 Sobic.002G313300 bromodomain domain containing protein, expressed -
13 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
14 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
15 Sobic.006G009400 G-patch domain containing protein, expressed -
16 Sobic.006G080300 SET domain containing protein, expressed -
17 Sobic.009G178800 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
18 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
19 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
20 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1


Gene co-expression network
sample Sobic001G544200 Sobic001G544200 Sobic004G031700 Sobic004G031700 Sobic001G544200--Sobic004G031700 Sobic001G477800 Sobic001G477800 Sobic001G544200--Sobic001G477800 Sobic001G464200 Sobic001G464200 Sobic001G544200--Sobic001G464200 Sobic009G040700 Sobic009G040700 Sobic001G544200--Sobic009G040700 Sobic001G511500 Sobic001G511500 Sobic001G544200--Sobic001G511500 Sobic006G128900 Sobic006G128900 Sobic001G544200--Sobic006G128900 Sobic008G078100 Sobic008G078100 Sobic001G544200--Sobic008G078100 Sobic008G054500 Sobic008G054500 Sobic001G544200--Sobic008G054500 Sobic001G094000 Sobic001G094000 Sobic001G544200--Sobic001G094000 Sobic009G000500 Sobic009G000500 Sobic004G031700--Sobic009G000500 Sobic003G445400 Sobic003G445400 Sobic004G031700--Sobic003G445400 Sobic004G031700--Sobic001G544200 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic002G158700 Sobic002G158700 Sobic004G031700--Sobic002G158700 Sobic002G313300 Sobic002G313300 Sobic001G477800--Sobic002G313300 Sobic001G477800--Sobic004G031700 Sobic001G477800--Sobic001G094000 Sobic001G477800--Sobic001G544200 Sobic001G543900 Sobic001G543900 Sobic001G477800--Sobic001G543900 Sobic001G477800--Sobic006G080300 Sobic001G477800--Sobic009G040700 Sobic007G011400 Sobic007G011400 Sobic001G477800--Sobic007G011400 Sobic006G009400 Sobic006G009400 Sobic001G477800--Sobic006G009400 Sobic001G464200--Sobic002G158700 Sobic001G464200--Sobic001G544200 Sobic001G464200--Sobic004G031700 Sobic001G464200--Sobic001G477800 Sobic001G464200--Sobic006G128900 Sobic002G144966 Sobic002G144966 Sobic001G464200--Sobic002G144966 Sobic001G464200--Sobic001G511500 Sobic010G263800 Sobic010G263800 Sobic001G464200--Sobic010G263800 Sobic001G464200--Sobic003G445400 Sobic009G040700--Sobic001G094000 Sobic003G187400 Sobic003G187400 Sobic009G040700--Sobic003G187400 Sobic005G149500 Sobic005G149500 Sobic009G040700--Sobic005G149500 Sobic009G040700--Sobic007G011400 Sobic002G157300 Sobic002G157300 Sobic009G040700--Sobic002G157300 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic004G196700 Sobic004G196700 Sobic009G040700--Sobic004G196700 Sobic009G040700--Sobic008G078100 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic003G119000 Sobic003G119000 Sobic001G511500--Sobic003G119000 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic006G128900--Sobic006G209850 Sobic006G128900--Sobic001G511500 Sobic006G128900--Sobic004G031700 Sobic006G128900--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic006G128900--Sobic001G090400 Sobic006G128900--Sobic003G445400 Sobic003G268300 Sobic003G268300 Sobic006G128900--Sobic003G268300 Sobic006G128900--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic006G128900--Sobic002G157000 Sobic008G078100--Sobic001G094000 Sobic008G078100--Sobic008G054500 Sobic008G078100--Sobic009G040700 Sobic008G078100--Sobic001G477800 Sobic008G078100--Sobic003G187400 Sobic008G078100--Sobic001G544200 Sobic007G185900 Sobic007G185900 Sobic008G078100--Sobic007G185900 Sobic003G422300 Sobic003G422300 Sobic008G078100--Sobic003G422300 Sobic008G078100--Sobic004G196700 Sobic008G173900 Sobic008G173900 Sobic008G054500--Sobic008G173900 Sobic003G200200 Sobic003G200200 Sobic008G054500--Sobic003G200200 Sobic008G054500--Sobic003G268300 Sobic002G248400 Sobic002G248400 Sobic008G054500--Sobic002G248400 Sobic008G054500--Sobic008G078100 Sobic008G054500--Sobic002G157000 Sobic008G054500--Sobic003G445400 Sobic008G054500--Sobic007G185900 Sobic003G397800 Sobic003G397800 Sobic008G054500--Sobic003G397800 Sobic001G094000--Sobic007G011400 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic001G094000--Sobic002G157300 Sobic001G094000--Sobic003G187400 Sobic001G094000--Sobic004G031700 Sobic001G094000--Sobic006G080300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.