Gene annotation
Transcriptome id Sobic.007G061700.1
Synonym Sb07g004940
Functional annotation vacuolar protein sorting-associated protein 18, putative, expressed
UniProt C5YHX2
Pfam PF00637 PF05131
Panther DB PTHR23323 PTHR23323:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT1G12470 : zinc ion binding
RAP-DB (Rice) LOC_Os08g08060.1 : vacuolar protein sorting-associated protein 18, putative, expressed
MaizeGDB (Corn) Zm00025a054738
Brachypodium KQJ95162
Barley HORVU5Hr1G093980.10 , HORVU5Hr1G093980.11 , HORVU5Hr1G093980.12 , HORVU5Hr1G093980.13 , HORVU5Hr1G093980.14 , HORVU5Hr1G093980.15 , HORVU5Hr1G093980.2 , HORVU5Hr1G093980.3 , HORVU5Hr1G093980.1 , HORVU5Hr1G093980.6 , HORVU5Hr1G093980.7 , HORVU5Hr1G093980.4 , HORVU5Hr1G093980.5 , HORVU5Hr1G093980.8 , HORVU5Hr1G093980.9 , HORVU5Hr1G125730.1
Wheat TraesCS5D02G390400 , TraesCS5B02G384200 , TraesCS5B02G384200 , TraesCS5B02G384200 , TraesCS5A02G380600 , TraesCS5A02G380600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
2 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
3 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
4 Sobic.003G401000 adaptin, putative, expressed K12400: AP-4 complex subunit epsilon-1
5 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
6 Sobic.001G542700 expressed protein -
7 Sobic.008G153000 MATH domain containing protein, expressed -
8 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
9 Sobic.004G031700 expressed protein -
10 Sobic.001G464200 flap endonuclease, putative, expressed K10846: ERCC5, XPG, DNA excision repair protein ERCC-5
11 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
12 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
13 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
14 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
15 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
16 Sobic.007G000800 expressed protein -
17 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
18 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
19 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
20 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4


Gene co-expression network
sample Sobic007G061700 Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic007G061700--Sobic008G149800 Sobic002G158700 Sobic002G158700 Sobic007G061700--Sobic002G158700 Sobic004G246100 Sobic004G246100 Sobic007G061700--Sobic004G246100 Sobic003G401000 Sobic003G401000 Sobic007G061700--Sobic003G401000 Sobic006G046700 Sobic006G046700 Sobic007G061700--Sobic006G046700 Sobic001G542700 Sobic001G542700 Sobic007G061700--Sobic001G542700 Sobic008G153000 Sobic008G153000 Sobic007G061700--Sobic008G153000 Sobic001G544200 Sobic001G544200 Sobic007G061700--Sobic001G544200 Sobic004G031700 Sobic004G031700 Sobic007G061700--Sobic004G031700 Sobic006G116100 Sobic006G116100 Sobic008G149800--Sobic006G116100 Sobic008G149800--Sobic008G153000 Sobic008G149800--Sobic007G061700 Sobic002G357700 Sobic002G357700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic008G149800--Sobic004G246100 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic002G158700--Sobic007G061700 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000 Sobic004G246100--Sobic008G149800 Sobic004G246100--Sobic008G153000 Sobic004G246100--Sobic007G061700 Sobic002G063900 Sobic002G063900 Sobic004G246100--Sobic002G063900 Sobic008G173100 Sobic008G173100 Sobic004G246100--Sobic008G173100 Sobic004G246100--Sobic006G116100 Sobic004G246100--Sobic006G046700 Sobic009G137100 Sobic009G137100 Sobic004G246100--Sobic009G137100 Sobic002G260400 Sobic002G260400 Sobic004G246100--Sobic002G260400 Sobic003G401000--Sobic002G158700 Sobic003G187400 Sobic003G187400 Sobic003G401000--Sobic003G187400 Sobic002G157300 Sobic002G157300 Sobic003G401000--Sobic002G157300 Sobic009G257800 Sobic009G257800 Sobic003G401000--Sobic009G257800 Sobic003G401000--Sobic001G155000 Sobic009G040700 Sobic009G040700 Sobic003G401000--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G401000--Sobic001G094000 Sobic006G028200 Sobic006G028200 Sobic003G401000--Sobic006G028200 Sobic003G008500 Sobic003G008500 Sobic003G401000--Sobic003G008500 Sobic006G046700--Sobic008G153000 Sobic006G046700--Sobic004G031700 Sobic007G026000 Sobic007G026000 Sobic006G046700--Sobic007G026000 Sobic001G206100 Sobic001G206100 Sobic006G046700--Sobic001G206100 Sobic001G306900 Sobic001G306900 Sobic006G046700--Sobic001G306900 Sobic006G046700--Sobic003G445400 Sobic001G425000 Sobic001G425000 Sobic006G046700--Sobic001G425000 Sobic001G405300 Sobic001G405300 Sobic006G046700--Sobic001G405300 Sobic006G013500 Sobic006G013500 Sobic006G046700--Sobic006G013500 Sobic004G009600 Sobic004G009600 Sobic001G542700--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic001G542700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic001G542700--Sobic001G241200 Sobic002G299700 Sobic002G299700 Sobic001G542700--Sobic002G299700 Sobic007G117400 Sobic007G117400 Sobic001G542700--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic001G542700--Sobic003G293200 Sobic009G040600 Sobic009G040600 Sobic001G542700--Sobic009G040600 Sobic001G542700--Sobic007G061700 Sobic010G209400 Sobic010G209400 Sobic001G542700--Sobic010G209400 Sobic008G153000--Sobic006G116100 Sobic008G153000--Sobic006G046700 Sobic008G153000--Sobic008G149800 Sobic002G264200 Sobic002G264200 Sobic008G153000--Sobic002G264200 Sobic008G153000--Sobic001G155000 Sobic008G153000--Sobic003G445400 Sobic003G059750 Sobic003G059750 Sobic008G153000--Sobic003G059750 Sobic008G153000--Sobic007G026000 Sobic010G069100 Sobic010G069100 Sobic008G153000--Sobic010G069100 Sobic001G544200--Sobic004G031700 Sobic001G477800 Sobic001G477800 Sobic001G544200--Sobic001G477800 Sobic001G544200--Sobic001G464200 Sobic001G544200--Sobic009G040700 Sobic001G511500 Sobic001G511500 Sobic001G544200--Sobic001G511500 Sobic006G128900 Sobic006G128900 Sobic001G544200--Sobic006G128900 Sobic008G078100 Sobic008G078100 Sobic001G544200--Sobic008G078100 Sobic008G054500 Sobic008G054500 Sobic001G544200--Sobic008G054500 Sobic001G544200--Sobic001G094000 Sobic009G000500 Sobic009G000500 Sobic004G031700--Sobic009G000500 Sobic004G031700--Sobic003G445400 Sobic004G031700--Sobic001G544200 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic004G031700--Sobic002G158700
Octagon: transcription factors


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