Gene annotation
Transcriptome id Sobic.004G246100.2
Synonym Sb04g028600
Functional annotation nicalin, putative, expressed
UniProt A0A194YRE5
Pfam PF04389
Panther DB PTHR21092 PTHR21092:SF0
NCBI CDD KOG2657; Transmembrane glycoprotein nicastrin
KEGG Orthology K06171; nicastrin
Gene Ontology GO:0016485; protein processing GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G52640 : Zn-dependent exopeptidases superfamily protein
RAP-DB (Rice) LOC_Os02g50360.1 : nicalin, putative, expressed
MaizeGDB (Corn) Zm00025a032678
Brachypodium PNT69679
Barley HORVU6Hr1G074260.6 , HORVU6Hr1G074260.5 , HORVU6Hr1G074260.4 , HORVU6Hr1G074260.3 , HORVU6Hr1G074260.2 , HORVU6Hr1G074260.1
Wheat TraesCS6D02G279200 , TraesCS6A02G299300 , TraesCS6D02G279200 , TraesCS6B02G328900 , TraesCS6B02G328900 , TraesCS6B02G328900
Populus -


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cDNA sequences
Sobic.004G246100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
2 Sobic.008G153000 MATH domain containing protein, expressed -
3 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
4 Sobic.002G063900 zinc ion binding protein, putative, expressed -
5 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
6 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
7 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
8 Sobic.009G137100 bZIP transcription factor domain containing protein, expressed -
9 Sobic.002G260400 - -
10 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
11 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
12 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
13 Sobic.002G423200 importin subunit alpha-1b, putative, expressed -
14 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
15 Sobic.006G281700 DUF803 domain containing, putative, expressed -
16 Sobic.006G138000 expressed protein -
17 Sobic.002G164300 ZOS9-03 - C2H2 zinc finger protein, expressed -
18 Sobic.002G126300 expressed protein -
19 Sobic.003G416700 homeobox domain containing protein, expressed -
20 Sobic.003G152400 WD domain containing protein, putative, expressed K17601: WD repeat-containing protein 81


Gene co-expression network
sample Sobic004G246100 Sobic004G246100 Sobic008G149800 Sobic008G149800 Sobic004G246100--Sobic008G149800 Sobic008G153000 Sobic008G153000 Sobic004G246100--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic004G246100--Sobic007G061700 Sobic002G063900 Sobic002G063900 Sobic004G246100--Sobic002G063900 Sobic008G173100 Sobic008G173100 Sobic004G246100--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic004G246100--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic004G246100--Sobic006G046700 Sobic009G137100 Sobic009G137100 Sobic004G246100--Sobic009G137100 Sobic002G260400 Sobic002G260400 Sobic004G246100--Sobic002G260400 Sobic008G149800--Sobic006G116100 Sobic008G149800--Sobic008G153000 Sobic008G149800--Sobic007G061700 Sobic002G357700 Sobic002G357700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 Sobic008G153000--Sobic006G116100 Sobic008G153000--Sobic006G046700 Sobic008G153000--Sobic008G149800 Sobic002G264200 Sobic002G264200 Sobic008G153000--Sobic002G264200 Sobic008G153000--Sobic001G155000 Sobic003G445400 Sobic003G445400 Sobic008G153000--Sobic003G445400 Sobic003G059750 Sobic003G059750 Sobic008G153000--Sobic003G059750 Sobic007G026000 Sobic007G026000 Sobic008G153000--Sobic007G026000 Sobic010G069100 Sobic010G069100 Sobic008G153000--Sobic010G069100 Sobic007G061700--Sobic008G149800 Sobic007G061700--Sobic002G158700 Sobic007G061700--Sobic004G246100 Sobic003G401000 Sobic003G401000 Sobic007G061700--Sobic003G401000 Sobic007G061700--Sobic006G046700 Sobic001G542700 Sobic001G542700 Sobic007G061700--Sobic001G542700 Sobic007G061700--Sobic008G153000 Sobic001G544200 Sobic001G544200 Sobic007G061700--Sobic001G544200 Sobic004G031700 Sobic004G031700 Sobic007G061700--Sobic004G031700 Sobic002G063900--Sobic008G173100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G063900--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic002G063900--Sobic007G090430 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic008G173100--Sobic002G260400 Sobic008G173100--Sobic007G090430 Sobic008G173100--Sobic006G116100 Sobic008G173100--Sobic002G063900 Sobic008G173100--Sobic002G264200 Sobic010G236400 Sobic010G236400 Sobic008G173100--Sobic010G236400 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic006G116100--Sobic008G153000 Sobic006G116100--Sobic008G149800 Sobic006G116100--Sobic008G173100 Sobic003G160000 Sobic003G160000 Sobic006G116100--Sobic003G160000 Sobic006G116100--Sobic002G063900 Sobic006G116100--Sobic002G357700 Sobic003G241200 Sobic003G241200 Sobic006G116100--Sobic003G241200 Sobic009G119000 Sobic009G119000 Sobic006G116100--Sobic009G119000 Sobic003G416700 Sobic003G416700 Sobic006G116100--Sobic003G416700 Sobic006G046700--Sobic008G153000 Sobic006G046700--Sobic004G031700 Sobic006G046700--Sobic007G026000 Sobic001G206100 Sobic001G206100 Sobic006G046700--Sobic001G206100 Sobic001G306900 Sobic001G306900 Sobic006G046700--Sobic001G306900 Sobic006G046700--Sobic003G445400 Sobic001G425000 Sobic001G425000 Sobic006G046700--Sobic001G425000 Sobic001G405300 Sobic001G405300 Sobic006G046700--Sobic001G405300 Sobic006G013500 Sobic006G013500 Sobic006G046700--Sobic006G013500 Sobic009G137100--Sobic004G246100 Sobic002G370900 Sobic002G370900 Sobic009G137100--Sobic002G370900 Sobic002G197100 Sobic002G197100 Sobic009G137100--Sobic002G197100 Sobic006G281700 Sobic006G281700 Sobic009G137100--Sobic006G281700 Sobic008G127400 Sobic008G127400 Sobic009G137100--Sobic008G127400 Sobic002G299100 Sobic002G299100 Sobic009G137100--Sobic002G299100 Sobic008G058800 Sobic008G058800 Sobic009G137100--Sobic008G058800 Sobic001G215400 Sobic001G215400 Sobic009G137100--Sobic001G215400 Sobic006G173100 Sobic006G173100 Sobic009G137100--Sobic006G173100 Sobic002G260400--Sobic008G173100 Sobic002G056701 Sobic002G056701 Sobic002G260400--Sobic002G056701 Sobic002G260400--Sobic002G063900 Sobic002G260400--Sobic002G370900 Sobic002G260400--Sobic006G116100 Sobic002G260400--Sobic008G153000 Sobic002G260400--Sobic010G236400 Sobic002G083500 Sobic002G083500 Sobic002G260400--Sobic002G083500 Sobic002G260400--Sobic010G245000
Octagon: transcription factors


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