Gene annotation
Transcriptome id Sobic.001G170100.1
Synonym Sb01g014880
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QJE5
Pfam PF06957
Panther DB PTHR19878 PTHR19878:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport GO:0005515protein binding GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT3G50590 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os09g24260.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007434
Brachypodium KQK20013
Barley HORVU5Hr1G067090.3 , HORVU5Hr1G067090.2 , HORVU5Hr1G067090.1 , HORVU5Hr1G067090.7 , HORVU5Hr1G067090.5 , HORVU5Hr1G067090.4 , HORVU5Hr1G067090.9 , HORVU5Hr1G067090.10 , HORVU5Hr1G067090.6 , HORVU5Hr1G067090.8
Wheat TraesCS7A02G009900 , TraesCS4A02G485300 , TraesCS7D02G009600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G138000 expressed protein -
2 Sobic.001G518400 EF hand family protein, putative, expressed -
3 Sobic.001G426600 SH3 domain containing protein, expressed -
4 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
5 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
6 Sobic.010G275500 EF hand family protein, putative, expressed -
7 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
8 Sobic.010G147833 - -
9 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
10 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
11 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
12 Sobic.010G223100 PAP/25A associated domain containing protein, putative, expressed -
13 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
14 Sobic.007G031600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
15 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
16 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
17 Sobic.003G249600 vacuolar protein sorting-associated protein 16, putative, expressed -
18 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
19 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
20 Sobic.003G314700 expressed protein -


Gene co-expression network
sample Sobic001G170100 Sobic001G170100 Sobic006G138000 Sobic006G138000 Sobic001G170100--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G170100--Sobic001G518400 Sobic001G426600 Sobic001G426600 Sobic001G170100--Sobic001G426600 Sobic001G335900 Sobic001G335900 Sobic001G170100--Sobic001G335900 Sobic001G369000 Sobic001G369000 Sobic001G170100--Sobic001G369000 Sobic010G275500 Sobic010G275500 Sobic001G170100--Sobic010G275500 Sobic003G240700 Sobic003G240700 Sobic001G170100--Sobic003G240700 Sobic010G147833 Sobic010G147833 Sobic001G170100--Sobic010G147833 Sobic007G019300 Sobic007G019300 Sobic001G170100--Sobic007G019300 Sobic006G138000--Sobic001G170100 Sobic006G138000--Sobic001G518400 Sobic006G138000--Sobic001G335900 Sobic006G138000--Sobic001G369000 Sobic006G138000--Sobic010G275500 Sobic006G138000--Sobic003G240700 Sobic003G187500 Sobic003G187500 Sobic006G138000--Sobic003G187500 Sobic006G138000--Sobic001G426600 Sobic010G053800 Sobic010G053800 Sobic006G138000--Sobic010G053800 Sobic001G518400--Sobic001G170100 Sobic001G518400--Sobic006G138000 Sobic001G518400--Sobic001G335900 Sobic001G078100 Sobic001G078100 Sobic001G518400--Sobic001G078100 Sobic009G229600 Sobic009G229600 Sobic001G518400--Sobic009G229600 Sobic001G518400--Sobic010G275500 Sobic006G202200 Sobic006G202200 Sobic001G518400--Sobic006G202200 Sobic003G126600 Sobic003G126600 Sobic001G518400--Sobic003G126600 Sobic001G518400--Sobic001G369000 Sobic001G534800 Sobic001G534800 Sobic001G426600--Sobic001G534800 Sobic001G426600--Sobic001G170100 Sobic009G049400 Sobic009G049400 Sobic001G426600--Sobic009G049400 Sobic001G426600--Sobic001G369000 Sobic001G426600--Sobic010G275500 Sobic001G287500 Sobic001G287500 Sobic001G426600--Sobic001G287500 Sobic001G426600--Sobic007G019300 Sobic004G039600 Sobic004G039600 Sobic001G426600--Sobic004G039600 Sobic004G051200 Sobic004G051200 Sobic001G426600--Sobic004G051200 Sobic001G335900--Sobic001G369000 Sobic001G335900--Sobic006G138000 Sobic001G335900--Sobic001G518400 Sobic001G335900--Sobic001G170100 Sobic001G335900--Sobic003G240700 Sobic001G335900--Sobic009G229600 Sobic001G335900--Sobic009G049400 Sobic007G120500 Sobic007G120500 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic001G369000--Sobic006G138000 Sobic001G369000--Sobic009G049400 Sobic001G369000--Sobic001G426600 Sobic001G369000--Sobic009G229600 Sobic010G275500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic010G275500--Sobic004G072100 Sobic006G012500 Sobic006G012500 Sobic010G275500--Sobic006G012500 Sobic001G155000 Sobic001G155000 Sobic010G275500--Sobic001G155000 Sobic010G116600 Sobic010G116600 Sobic010G275500--Sobic010G116600 Sobic010G069100 Sobic010G069100 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic007G183900 Sobic007G183900 Sobic010G275500--Sobic007G183900 Sobic002G397500 Sobic002G397500 Sobic010G275500--Sobic002G397500 Sobic003G240700--Sobic001G369000 Sobic003G240700--Sobic001G335900 Sobic003G240700--Sobic001G170100 Sobic003G240700--Sobic006G138000 Sobic003G314700 Sobic003G314700 Sobic003G240700--Sobic003G314700 Sobic003G293000 Sobic003G293000 Sobic003G240700--Sobic003G293000 Sobic003G240700--Sobic009G049400 Sobic003G240700--Sobic001G426600 Sobic003G227100 Sobic003G227100 Sobic003G240700--Sobic003G227100 Sobic001G214600 Sobic001G214600 Sobic010G147833--Sobic001G214600 Sobic004G260100 Sobic004G260100 Sobic010G147833--Sobic004G260100 Sobic010G147833--Sobic001G170100 Sobic010G147833--Sobic007G019300 Sobic010G147833--Sobic001G426600 Sobic003G057700 Sobic003G057700 Sobic010G147833--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic010G147833--Sobic003G249600 Sobic010G147833--Sobic007G120500 Sobic010G147833--Sobic001G287500 Sobic003G312100 Sobic003G312100 Sobic007G019300--Sobic003G312100 Sobic008G124800 Sobic008G124800 Sobic007G019300--Sobic008G124800 Sobic003G233400 Sobic003G233400 Sobic007G019300--Sobic003G233400 Sobic007G019300--Sobic001G426600 Sobic007G019300--Sobic003G314700 Sobic007G019300--Sobic001G170100 Sobic007G019300--Sobic010G147833 Sobic007G019300--Sobic004G260100 Sobic009G084900 Sobic009G084900 Sobic007G019300--Sobic009G084900
Octagon: transcription factors


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