Gene annotation
Transcriptome id Sobic.001G335900.1
Synonym TTD8, POK, ATVPS52, Sb01g032420
Functional annotation vacuolar protein sorting-associated protein 52, putative, expressed
UniProt C5WWJ7
Pfam PF04129
Panther DB PTHR14190 PTHR14190:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71270 : Vps52 / Sac2 family
RAP-DB (Rice) LOC_Os03g30460.1 : vacuolar protein sorting-associated protein 52, putative, expressed
MaizeGDB (Corn) Zm00025a052186
Brachypodium PNT77247 , KQK21279 , KQK21278
Barley HORVU7Hr1G120860.1 , HORVU5Hr1G072260.6 , HORVU5Hr1G072260.7 , HORVU5Hr1G072260.4 , HORVU5Hr1G072260.5 , HORVU5Hr1G072260.2 , HORVU5Hr1G072260.3 , HORVU5Hr1G072260.1 , HORVU3Hr1G101660.1 , HORVU7Hr1G120860.2
Wheat TraesCS5D02G267000 , TraesCS5D02G267000 , TraesCS5B02G257900 , TraesCS5B02G257900 , TraesCS5A02G259200 , TraesCS5A02G259200
Populus -


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cDNA sequences
Sobic.001G335900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
2 Sobic.006G138000 expressed protein -
3 Sobic.001G518400 EF hand family protein, putative, expressed -
4 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
6 Sobic.009G229600 tRNA-binding arm, putative, expressed -
7 Sobic.009G049400 "SRS3(Ortholog in rice:Kitagawa et al., 2010)"(PubMedID : 31659920)@ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
8 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
9 Sobic.K004100 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
11 Sobic.001G426600 SH3 domain containing protein, expressed -
12 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
13 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
14 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
15 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
16 Sobic.003G293000 expressed protein -
17 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
18 Sobic.001G012900 brefeldin A-sensitive Golgi protein-like, putative, expressed -
19 Sobic.009G226400 dynamin family protein, putative, expressed -
20 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -


Gene co-expression network
sample Sobic001G335900 Sobic001G335900 Sobic001G369000 Sobic001G369000 Sobic001G335900--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic001G335900--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G335900--Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G335900--Sobic001G170100 Sobic003G240700 Sobic003G240700 Sobic001G335900--Sobic003G240700 Sobic009G229600 Sobic009G229600 Sobic001G335900--Sobic009G229600 Sobic009G049400 Sobic009G049400 Sobic001G335900--Sobic009G049400 Sobic007G120500 Sobic007G120500 Sobic001G335900--Sobic007G120500 SobicK004100 SobicK004100 Sobic001G335900--SobicK004100 Sobic004G039600 Sobic004G039600 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic001G369000--Sobic006G138000 Sobic001G369000--Sobic009G049400 Sobic001G426600 Sobic001G426600 Sobic001G369000--Sobic001G426600 Sobic001G369000--Sobic009G229600 Sobic006G138000--Sobic001G170100 Sobic006G138000--Sobic001G518400 Sobic006G138000--Sobic001G335900 Sobic006G138000--Sobic001G369000 Sobic010G275500 Sobic010G275500 Sobic006G138000--Sobic010G275500 Sobic006G138000--Sobic003G240700 Sobic003G187500 Sobic003G187500 Sobic006G138000--Sobic003G187500 Sobic006G138000--Sobic001G426600 Sobic010G053800 Sobic010G053800 Sobic006G138000--Sobic010G053800 Sobic001G518400--Sobic001G170100 Sobic001G518400--Sobic006G138000 Sobic001G518400--Sobic001G335900 Sobic001G078100 Sobic001G078100 Sobic001G518400--Sobic001G078100 Sobic001G518400--Sobic009G229600 Sobic001G518400--Sobic010G275500 Sobic006G202200 Sobic006G202200 Sobic001G518400--Sobic006G202200 Sobic003G126600 Sobic003G126600 Sobic001G518400--Sobic003G126600 Sobic001G518400--Sobic001G369000 Sobic001G170100--Sobic006G138000 Sobic001G170100--Sobic001G518400 Sobic001G170100--Sobic001G426600 Sobic001G170100--Sobic001G335900 Sobic001G170100--Sobic001G369000 Sobic001G170100--Sobic010G275500 Sobic001G170100--Sobic003G240700 Sobic010G147833 Sobic010G147833 Sobic001G170100--Sobic010G147833 Sobic007G019300 Sobic007G019300 Sobic001G170100--Sobic007G019300 Sobic003G240700--Sobic001G369000 Sobic003G240700--Sobic001G335900 Sobic003G240700--Sobic001G170100 Sobic003G240700--Sobic006G138000 Sobic003G314700 Sobic003G314700 Sobic003G240700--Sobic003G314700 Sobic003G293000 Sobic003G293000 Sobic003G240700--Sobic003G293000 Sobic003G240700--Sobic009G049400 Sobic003G240700--Sobic001G426600 Sobic003G227100 Sobic003G227100 Sobic003G240700--Sobic003G227100 Sobic009G229600--Sobic009G049400 Sobic009G229600--Sobic001G369000 Sobic009G229600--Sobic001G335900 Sobic003G427600 Sobic003G427600 Sobic009G229600--Sobic003G427600 Sobic003G270600 Sobic003G270600 Sobic009G229600--Sobic003G270600 Sobic009G229600--Sobic006G202200 Sobic009G229600--Sobic001G518400 Sobic009G229600--Sobic004G039600 Sobic009G229600--Sobic007G120500 Sobic009G049400--Sobic001G369000 Sobic009G049400--Sobic009G229600 Sobic009G049400--Sobic001G426600 Sobic003G394200 Sobic003G394200 Sobic009G049400--Sobic003G394200 Sobic009G049400--Sobic001G335900 Sobic009G049400--Sobic006G163800 Sobic003G189600 Sobic003G189600 Sobic009G049400--Sobic003G189600 Sobic009G049400--Sobic004G039600 Sobic009G049400--Sobic003G240700 Sobic007G120500--Sobic001G369000 Sobic007G120500--Sobic004G039600 Sobic007G132100 Sobic007G132100 Sobic007G120500--Sobic007G132100 Sobic006G012500 Sobic006G012500 Sobic007G120500--Sobic006G012500 Sobic003G057700 Sobic003G057700 Sobic007G120500--Sobic003G057700 Sobic003G249600 Sobic003G249600 Sobic007G120500--Sobic003G249600 Sobic004G072100 Sobic004G072100 Sobic007G120500--Sobic004G072100 Sobic007G120500--Sobic010G053800 Sobic007G120500--Sobic003G394200 SobicK004100--Sobic001G369000 SobicK004100--Sobic004G039600 Sobic003G099300 Sobic003G099300 SobicK004100--Sobic003G099300 SobicK004100--Sobic001G335900 SobicK004100--Sobic007G120500 SobicK004100--Sobic009G049400 SobicK004100--Sobic003G240700 Sobic009G226400 Sobic009G226400 SobicK004100--Sobic009G226400 Sobic001G449900 Sobic001G449900 SobicK004100--Sobic001G449900
Octagon: transcription factors


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