Gene annotation
Transcriptome id Sobic.005G216300.1
Synonym Sb05g026740
Functional annotation RNA recognition motif containing protein, expressed
UniProt C5Y7Z5
Pfam PF13893 PF14259 PF00076
Panther DB PTHR23139 PTHR23139:SF62
NCBI CDD KOG0120; Splicing factor U2AF, large subunit (RRM superfamily)
KEGG Orthology K12837; splicing factor U2AF 65 kDa subunit
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G36690 : U2 snRNP auxilliary factor, large subunit, splicing factor
RAP-DB (Rice) LOC_Os11g45590.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a015888 , Zm00025a029128 , Zm00025a029267
Brachypodium KQJ87609 , PNT63164 , PNT63165 , PNT63162 , PNT63163 , KQJ87234 , KQJ87235 , KQJ87236 , KQJ87233 , KQJ87610 , KQJ87611
Barley HORVU4Hr1G038850.32 , HORVU4Hr1G029030.8 , HORVU4Hr1G029030.9 , HORVU4Hr1G029030.6 , HORVU4Hr1G029030.7 , HORVU4Hr1G029030.4 , HORVU4Hr1G029030.5 , HORVU4Hr1G029030.2 , HORVU4Hr1G029030.3 , HORVU4Hr1G029030.1 , HORVU4Hr1G038850.35 , HORVU4Hr1G038850.18 , HORVU4Hr1G038850.19 , HORVU4Hr1G038850.10 , HORVU4Hr1G038850.11 , HORVU4Hr1G038850.12 , HORVU4Hr1G038850.13 , HORVU4Hr1G038850.14 , HORVU4Hr1G038850.15 , HORVU4Hr1G038850.16 , HORVU4Hr1G038850.17 , HORVU4Hr1G029030.14 , HORVU4Hr1G029030.15 , HORVU4Hr1G029030.16 , HORVU4Hr1G029030.17 , HORVU4Hr1G029030.10 , HORVU4Hr1G029030.11 , HORVU4Hr1G029030.12 , HORVU4Hr1G029030.13 , HORVU4Hr1G029030.18 , HORVU4Hr1G029030.19 , HORVU4Hr1G038850.29 , HORVU4Hr1G038850.28 , HORVU4Hr1G038850.25 , HORVU4Hr1G038850.24 , HORVU4Hr1G038850.27 , HORVU4Hr1G038850.26 , HORVU4Hr1G038850.21 , HORVU4Hr1G038850.20 , HORVU4Hr1G038850.23 , HORVU4Hr1G038850.22 , HORVU4Hr1G038850.8 , HORVU4Hr1G038850.9 , HORVU4Hr1G038850.3 , HORVU4Hr1G038850.1 , HORVU4Hr1G038850.6 , HORVU4Hr1G038850.7 , HORVU4Hr1G038850.4 , HORVU4Hr1G038850.5 , HORVU4Hr1G029030.29 , HORVU4Hr1G029030.28 , HORVU4Hr1G029030.21 , HORVU4Hr1G029030.20 , HORVU4Hr1G029030.23 , HORVU4Hr1G029030.22 , HORVU4Hr1G029030.24 , HORVU4Hr1G029030.27 , HORVU4Hr1G029030.26 , HORVU4Hr1G038850.33 , HORVU4Hr1G038850.30 , HORVU4Hr1G038850.31 , HORVU4Hr1G038850.34
Wheat TraesCS4A02G165000 , TraesCS4A02G165000 , TraesCS4A02G165000 , TraesCS4A02G165000 , TraesCS4A02G171800 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4D02G143400 , TraesCS4B02G145600 , TraesCS4B02G145600 , TraesCS4B02G145600 , TraesCS4B02G145600 , TraesCS4A02G171800 , TraesCS4A02G171800 , TraesCS4A02G171800 , TraesCS4A02G171800 , TraesCS4D02G150000 , TraesCS4D02G150000 , TraesCS4D02G150000 , TraesCS4D02G150000 , TraesCS4D02G150000 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCSU02G068100 , TraesCSU02G068100
Populus -


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cDNA sequences
Sobic.005G216300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
2 Sobic.007G027700 expressed protein -
3 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
4 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
5 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
6 Sobic.001G426600 SH3 domain containing protein, expressed -
7 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
8 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
9 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
10 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
11 Sobic.006G138000 expressed protein -
12 Sobic.001G518400 EF hand family protein, putative, expressed -
13 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
14 Sobic.006G252700 protein kinase domain containing protein, expressed -
15 Sobic.001G515100 ATP binding protein, putative, expressed K06883: uncharacterized protein
16 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
17 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
18 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
19 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
20 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck


Gene co-expression network
sample Sobic005G216300 Sobic005G216300 Sobic003G099300 Sobic003G099300 Sobic005G216300--Sobic003G099300 Sobic007G027700 Sobic007G027700 Sobic005G216300--Sobic007G027700 Sobic004G039600 Sobic004G039600 Sobic005G216300--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic005G216300--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic003G126600 Sobic003G126600 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500 Sobic010G269100 Sobic010G269100 Sobic003G099300--Sobic010G269100 Sobic003G099300--Sobic004G039600 Sobic003G099300--Sobic005G216300 SobicK004100 SobicK004100 Sobic003G099300--SobicK004100 Sobic003G099300--Sobic001G369000 Sobic005G115500 Sobic005G115500 Sobic003G099300--Sobic005G115500 Sobic002G256200 Sobic002G256200 Sobic003G099300--Sobic002G256200 Sobic006G056200 Sobic006G056200 Sobic003G099300--Sobic006G056200 Sobic009G231700 Sobic009G231700 Sobic003G099300--Sobic009G231700 Sobic008G127400 Sobic008G127400 Sobic007G027700--Sobic008G127400 Sobic003G401100 Sobic003G401100 Sobic007G027700--Sobic003G401100 Sobic003G412300 Sobic003G412300 Sobic007G027700--Sobic003G412300 Sobic001G143500 Sobic001G143500 Sobic007G027700--Sobic001G143500 Sobic004G325400 Sobic004G325400 Sobic007G027700--Sobic004G325400 Sobic007G027700--Sobic005G216300 Sobic001G395100 Sobic001G395100 Sobic007G027700--Sobic001G395100 Sobic010G279900 Sobic010G279900 Sobic007G027700--Sobic010G279900 Sobic006G267300 Sobic006G267300 Sobic007G027700--Sobic006G267300 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic001G369000--Sobic004G039600 Sobic001G369000--Sobic001G335900 Sobic001G369000--Sobic007G120500 Sobic003G240700 Sobic003G240700 Sobic001G369000--Sobic003G240700 Sobic006G163800 Sobic006G163800 Sobic001G369000--Sobic006G163800 Sobic006G138000 Sobic006G138000 Sobic001G369000--Sobic006G138000 Sobic009G049400 Sobic009G049400 Sobic001G369000--Sobic009G049400 Sobic001G369000--Sobic001G426600 Sobic009G229600 Sobic009G229600 Sobic001G369000--Sobic009G229600 Sobic001G335900--Sobic001G369000 Sobic001G335900--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G335900--Sobic001G518400 Sobic001G170100 Sobic001G170100 Sobic001G335900--Sobic001G170100 Sobic001G335900--Sobic003G240700 Sobic001G335900--Sobic009G229600 Sobic001G335900--Sobic009G049400 Sobic001G335900--Sobic007G120500 Sobic001G335900--SobicK004100 Sobic001G426600--Sobic001G534800 Sobic001G426600--Sobic001G170100 Sobic001G426600--Sobic009G049400 Sobic001G426600--Sobic001G369000 Sobic010G275500 Sobic010G275500 Sobic001G426600--Sobic010G275500 Sobic001G287500 Sobic001G287500 Sobic001G426600--Sobic001G287500 Sobic007G019300 Sobic007G019300 Sobic001G426600--Sobic007G019300 Sobic001G426600--Sobic004G039600 Sobic004G051200 Sobic004G051200 Sobic001G426600--Sobic004G051200 Sobic005G004200 Sobic005G004200 Sobic001G142100--Sobic005G004200 Sobic008G131000 Sobic008G131000 Sobic001G142100--Sobic008G131000 Sobic003G187500 Sobic003G187500 Sobic001G142100--Sobic003G187500 Sobic001G142100--Sobic005G216300 Sobic001G142100--Sobic003G401100 Sobic006G252700 Sobic006G252700 Sobic001G142100--Sobic006G252700 Sobic003G439800 Sobic003G439800 Sobic001G142100--Sobic003G439800 Sobic006G114500 Sobic006G114500 Sobic001G142100--Sobic006G114500 Sobic003G114700 Sobic003G114700 Sobic001G142100--Sobic003G114700 Sobic003G126600--Sobic004G039600 Sobic003G249600 Sobic003G249600 Sobic003G126600--Sobic003G249600 Sobic003G126600--Sobic009G229600 Sobic003G126600--Sobic003G187500 Sobic003G126600--Sobic010G053800 Sobic003G126600--Sobic001G518400 Sobic003G126600--Sobic001G369000 Sobic003G187200 Sobic003G187200 Sobic003G126600--Sobic003G187200 Sobic004G072100 Sobic004G072100 Sobic003G126600--Sobic004G072100 Sobic004G135400 Sobic004G135400 Sobic006G208500--Sobic004G135400 Sobic003G006400 Sobic003G006400 Sobic006G208500--Sobic003G006400 Sobic006G136400 Sobic006G136400 Sobic006G208500--Sobic006G136400 Sobic009G245800 Sobic009G245800 Sobic006G208500--Sobic009G245800 Sobic006G208500--Sobic006G126100 Sobic006G208500--Sobic004G039600 Sobic006G200700 Sobic006G200700 Sobic006G208500--Sobic006G200700 Sobic006G208500--Sobic001G369000 Sobic004G277200 Sobic004G277200 Sobic006G208500--Sobic004G277200
Octagon: transcription factors


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