Gene annotation
Transcriptome id Sobic.007G027700.1
Synonym Sb07g002420
Functional annotation expressed protein
UniProt C5YMW2
Pfam -
Panther DB PTHR35696 PTHR35696:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32730 : -
RAP-DB (Rice) LOC_Os08g03550.1 : expressed protein
MaizeGDB (Corn) Zm00025a030187 , Zm00025a040375
Brachypodium KQJ94942
Barley HORVU7Hr1G074380.5 , HORVU7Hr1G074380.4 , HORVU7Hr1G074380.1 , HORVU7Hr1G074380.3 , HORVU7Hr1G074380.2
Wheat TraesCS7D02G307700 , TraesCS7A02G311300 , TraesCS7B02G210900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -
2 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
3 Sobic.003G412300 expressed protein -
4 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
5 Sobic.004G325400 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
6 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
7 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
8 Sobic.010G279900 PHD-finger domain containing protein, expressed -
9 Sobic.006G267300 expressed protein -
10 Sobic.007G009400 bromodomain domain containing protein, expressed -
11 Sobic.002G264200 RNA recognition motif containing protein, expressed -
12 Sobic.007G183900 ubiquitin family protein, putative, expressed -
13 Sobic.002G423200 importin subunit alpha-1b, putative, expressed -
14 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
15 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
16 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
17 Sobic.001G094900 protein transport protein Sec23B, putative, expressed K14006: protein transport protein SEC23
18 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
19 Sobic.006G248500 expressed protein -
20 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14


Gene co-expression network
sample Sobic007G027700 Sobic007G027700 Sobic008G127400 Sobic008G127400 Sobic007G027700--Sobic008G127400 Sobic003G401100 Sobic003G401100 Sobic007G027700--Sobic003G401100 Sobic003G412300 Sobic003G412300 Sobic007G027700--Sobic003G412300 Sobic001G143500 Sobic001G143500 Sobic007G027700--Sobic001G143500 Sobic004G325400 Sobic004G325400 Sobic007G027700--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic007G027700--Sobic005G216300 Sobic001G395100 Sobic001G395100 Sobic007G027700--Sobic001G395100 Sobic010G279900 Sobic010G279900 Sobic007G027700--Sobic010G279900 Sobic006G267300 Sobic006G267300 Sobic007G027700--Sobic006G267300 Sobic008G127400--Sobic007G027700 Sobic008G127400--Sobic006G267300 Sobic003G205501 Sobic003G205501 Sobic008G127400--Sobic003G205501 Sobic006G065800 Sobic006G065800 Sobic008G127400--Sobic006G065800 Sobic004G246700 Sobic004G246700 Sobic008G127400--Sobic004G246700 Sobic008G058800 Sobic008G058800 Sobic008G127400--Sobic008G058800 Sobic002G423200 Sobic002G423200 Sobic008G127400--Sobic002G423200 Sobic006G248500 Sobic006G248500 Sobic008G127400--Sobic006G248500 Sobic010G033400 Sobic010G033400 Sobic008G127400--Sobic010G033400 Sobic010G236400 Sobic010G236400 Sobic003G401100--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic003G401100--Sobic007G027700 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic003G412300--Sobic007G027700 Sobic003G412300--Sobic003G401100 Sobic004G156500 Sobic004G156500 Sobic003G412300--Sobic004G156500 Sobic001G138400 Sobic001G138400 Sobic003G412300--Sobic001G138400 Sobic006G252700 Sobic006G252700 Sobic003G412300--Sobic006G252700 Sobic002G058300 Sobic002G058300 Sobic003G412300--Sobic002G058300 Sobic007G054400 Sobic007G054400 Sobic003G412300--Sobic007G054400 Sobic002G259800 Sobic002G259800 Sobic003G412300--Sobic002G259800 Sobic002G357100 Sobic002G357100 Sobic003G412300--Sobic002G357100 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G466700 Sobic001G466700 Sobic001G143500--Sobic001G466700 Sobic006G278700 Sobic006G278700 Sobic001G143500--Sobic006G278700 Sobic001G143500--Sobic006G267300 Sobic009G257800 Sobic009G257800 Sobic004G325400--Sobic009G257800 Sobic004G325400--Sobic007G027700 Sobic007G009400 Sobic007G009400 Sobic004G325400--Sobic007G009400 Sobic004G325400--Sobic003G401100 Sobic004G325400--Sobic001G143500 Sobic004G021200 Sobic004G021200 Sobic004G325400--Sobic004G021200 Sobic003G401000 Sobic003G401000 Sobic004G325400--Sobic003G401000 Sobic004G072100 Sobic004G072100 Sobic004G325400--Sobic004G072100 Sobic004G325400--Sobic008G127400 Sobic003G099300 Sobic003G099300 Sobic005G216300--Sobic003G099300 Sobic005G216300--Sobic007G027700 Sobic004G039600 Sobic004G039600 Sobic005G216300--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic005G216300--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic003G126600 Sobic003G126600 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500 Sobic006G121300 Sobic006G121300 Sobic001G395100--Sobic006G121300 Sobic002G034600 Sobic002G034600 Sobic001G395100--Sobic002G034600 Sobic007G191700 Sobic007G191700 Sobic001G395100--Sobic007G191700 Sobic001G473600 Sobic001G473600 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic001G395100--Sobic007G027700 Sobic007G056500 Sobic007G056500 Sobic001G395100--Sobic007G056500 Sobic001G395100--Sobic006G248500 Sobic001G042200 Sobic001G042200 Sobic001G395100--Sobic001G042200 Sobic010G279900--Sobic004G156500 Sobic007G183300 Sobic007G183300 Sobic010G279900--Sobic007G183300 Sobic004G086200 Sobic004G086200 Sobic010G279900--Sobic004G086200 Sobic001G367100 Sobic001G367100 Sobic010G279900--Sobic001G367100 Sobic010G279900--Sobic007G027700 Sobic003G409200 Sobic003G409200 Sobic010G279900--Sobic003G409200 Sobic003G253400 Sobic003G253400 Sobic010G279900--Sobic003G253400 Sobic003G416700 Sobic003G416700 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic006G267300--Sobic007G111100 Sobic006G267300--Sobic009G257800 Sobic006G267300--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic006G267300--Sobic001G408700 Sobic009G195200 Sobic009G195200 Sobic006G267300--Sobic009G195200 Sobic007G118200 Sobic007G118200 Sobic006G267300--Sobic007G118200 Sobic010G202600 Sobic010G202600 Sobic006G267300--Sobic010G202600 Sobic003G433500 Sobic003G433500 Sobic006G267300--Sobic003G433500 Sobic006G267300--Sobic008G127400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.