Gene annotation
Transcriptome id Sobic.001G094900.1
Synonym Sb01g008490
Functional annotation protein transport protein Sec23B, putative, expressed
UniProt C5X188
Pfam PF00626 PF04810 PF04815 PF08033 PF04811
Panther DB PTHR11141 PTHR11141:SF4
NCBI CDD -
KEGG Orthology K14006; protein transport protein SEC23
Gene Ontology GO:0008270; zinc ion binding GO:0006888endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT5G43670 : Sec23/Sec24 protein transport family protein
RAP-DB (Rice) LOC_Os03g53140.1 : protein transport protein Sec23B, putative, expressed
MaizeGDB (Corn) Zm00025a008097 , Zm00025a016834
Brachypodium KQK13273
Barley HORVU5Hr1G094210.8 , HORVU5Hr1G094210.7 , HORVU5Hr1G094210.6 , HORVU5Hr1G094210.5 , HORVU5Hr1G094210.4 , HORVU5Hr1G094210.3 , HORVU5Hr1G094210.2 , HORVU5Hr1G094210.1
Wheat TraesCS5D02G391900 , TraesCS5D02G391900 , TraesCS5B02G386700 , TraesCS5B02G386700 , TraesCS5A02G382500 , TraesCS5A02G382500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
2 Sobic.006G118700 MYB family transcription factor, putative, expressed -
3 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
4 Sobic.008G092300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
5 Sobic.007G183900 ubiquitin family protein, putative, expressed -
6 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
7 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
8 Sobic.001G261456 - -
9 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
10 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
11 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin
12 Sobic.007G027700 expressed protein -
13 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
14 Sobic.004G286500 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
15 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
16 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
17 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
18 Sobic.001G026500 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL6 - SBP-box gene family member, expressed -
19 Sobic.001G078100 expressed protein -
20 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C


Gene co-expression network
sample Sobic001G094900 Sobic001G094900 Sobic010G279700 Sobic010G279700 Sobic001G094900--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic001G094900--Sobic006G118700 Sobic001G281600 Sobic001G281600 Sobic001G094900--Sobic001G281600 Sobic008G092300 Sobic008G092300 Sobic001G094900--Sobic008G092300 Sobic007G183900 Sobic007G183900 Sobic001G094900--Sobic007G183900 Sobic008G179700 Sobic008G179700 Sobic001G094900--Sobic008G179700 Sobic001G124200 Sobic001G124200 Sobic001G094900--Sobic001G124200 Sobic001G261456 Sobic001G261456 Sobic001G094900--Sobic001G261456 Sobic003G401100 Sobic003G401100 Sobic001G094900--Sobic003G401100 Sobic010G279700--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic010G279700--Sobic008G083000 Sobic010G279700--Sobic003G401100 Sobic010G279700--Sobic001G094900 Sobic007G191700 Sobic007G191700 Sobic010G279700--Sobic007G191700 Sobic005G106500 Sobic005G106500 Sobic010G279700--Sobic005G106500 Sobic010G279700--Sobic008G092300 Sobic007G203200 Sobic007G203200 Sobic010G279700--Sobic007G203200 Sobic004G021200 Sobic004G021200 Sobic010G279700--Sobic004G021200 Sobic006G118700--Sobic007G183900 Sobic002G264200 Sobic002G264200 Sobic006G118700--Sobic002G264200 Sobic010G112100 Sobic010G112100 Sobic006G118700--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic010G236400 Sobic010G236400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic001G281600--Sobic008G179700 Sobic008G092300--Sobic010G279700 Sobic008G092300--Sobic001G094900 Sobic007G225100 Sobic007G225100 Sobic008G092300--Sobic007G225100 Sobic008G092300--Sobic001G261456 Sobic010G269100 Sobic010G269100 Sobic008G092300--Sobic010G269100 Sobic003G126600 Sobic003G126600 Sobic008G092300--Sobic003G126600 Sobic008G112800 Sobic008G112800 Sobic008G092300--Sobic008G112800 Sobic001G102700 Sobic001G102700 Sobic008G092300--Sobic001G102700 Sobic004G039600 Sobic004G039600 Sobic008G092300--Sobic004G039600 Sobic003G416700 Sobic003G416700 Sobic007G183900--Sobic003G416700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic007G183900--Sobic010G236400 Sobic009G044800 Sobic009G044800 Sobic007G183900--Sobic009G044800 Sobic007G183900--Sobic010G069100 Sobic010G275500 Sobic010G275500 Sobic007G183900--Sobic010G275500 Sobic001G354600 Sobic001G354600 Sobic007G183900--Sobic001G354600 Sobic007G183900--Sobic002G264200 Sobic002G350300 Sobic002G350300 Sobic008G179700--Sobic002G350300 Sobic003G248200 Sobic003G248200 Sobic008G179700--Sobic003G248200 Sobic008G179700--Sobic001G281600 Sobic001G356600 Sobic001G356600 Sobic008G179700--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic008G179700--Sobic009G179700 Sobic008G179700--Sobic004G084300 Sobic008G179700--Sobic003G401100 Sobic002G126500 Sobic002G126500 Sobic008G179700--Sobic002G126500 Sobic001G512700 Sobic001G512700 Sobic008G179700--Sobic001G512700 Sobic010G205800 Sobic010G205800 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic007G132100 Sobic007G132100 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G390800 Sobic001G390800 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic001G261456--Sobic004G039600 Sobic001G261456--Sobic001G094900 Sobic001G261456--Sobic008G092300 Sobic001G261456--Sobic001G124200 Sobic009G219000 Sobic009G219000 Sobic001G261456--Sobic009G219000 Sobic001G371200 Sobic001G371200 Sobic001G261456--Sobic001G371200 Sobic003G400100 Sobic003G400100 Sobic001G261456--Sobic003G400100 Sobic001G261456--Sobic001G281600 Sobic001G143500 Sobic001G143500 Sobic001G261456--Sobic001G143500 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200
Octagon: transcription factors


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