Gene annotation
Transcriptome id Sobic.001G261456.5,Sobic.001G261456.1,Sobic.001G261456.2,Sobic.001G261456.3,Sobic.001G261456.4
Synonym -
Functional annotation -
UniProt C6JRS7 , A0A1Z5S7K1
Pfam PF00995
Panther DB PTHR11679 PTHR11679:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006904vesicle docking involved in exocytosis


Orthologs (automatic annotation)
TAIR AT2G17980 : Sec1/munc18-like (SM) proteins superfamily
RAP-DB (Rice) LOC_Os03g42320.1 : Sec1 family transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a004028 , Zm00025a032695 , Zm00025a031076
Brachypodium KQK13008 , KQJ85002
Barley HORVU5Hr1G009740.3 , HORVU5Hr1G009740.1 , HORVU5Hr1G009740.5 , HORVU5Hr1G009740.4 , HORVU5Hr1G009740.2
Wheat TraesCS5B02G039900 , TraesCS5D02G045800 , TraesCS5A02G038500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
2 Sobic.001G094900 protein transport protein Sec23B, putative, expressed K14006: protein transport protein SEC23
3 Sobic.008G092300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
4 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
5 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
6 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
7 Sobic.003G400100 leaf senescence related protein, putative, expressed -
8 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
9 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
10 Sobic.001G085100 expressed protein -
11 Sobic.003G187200 phox domain-containing protein, putative, expressed -
12 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
13 Sobic.004G286500 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
14 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
15 Sobic.009G257200 CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
16 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
17 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
18 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
19 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
20 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic001G261456 Sobic001G261456 Sobic004G039600 Sobic004G039600 Sobic001G261456--Sobic004G039600 Sobic001G094900 Sobic001G094900 Sobic001G261456--Sobic001G094900 Sobic008G092300 Sobic008G092300 Sobic001G261456--Sobic008G092300 Sobic001G124200 Sobic001G124200 Sobic001G261456--Sobic001G124200 Sobic009G219000 Sobic009G219000 Sobic001G261456--Sobic009G219000 Sobic001G371200 Sobic001G371200 Sobic001G261456--Sobic001G371200 Sobic003G400100 Sobic003G400100 Sobic001G261456--Sobic003G400100 Sobic001G281600 Sobic001G281600 Sobic001G261456--Sobic001G281600 Sobic001G143500 Sobic001G143500 Sobic001G261456--Sobic001G143500 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic001G369000 Sobic001G369000 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic010G279700 Sobic010G279700 Sobic001G094900--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic001G094900--Sobic006G118700 Sobic001G094900--Sobic001G281600 Sobic001G094900--Sobic008G092300 Sobic007G183900 Sobic007G183900 Sobic001G094900--Sobic007G183900 Sobic008G179700 Sobic008G179700 Sobic001G094900--Sobic008G179700 Sobic001G094900--Sobic001G124200 Sobic001G094900--Sobic001G261456 Sobic003G401100 Sobic003G401100 Sobic001G094900--Sobic003G401100 Sobic008G092300--Sobic010G279700 Sobic008G092300--Sobic001G094900 Sobic007G225100 Sobic007G225100 Sobic008G092300--Sobic007G225100 Sobic008G092300--Sobic001G261456 Sobic010G269100 Sobic010G269100 Sobic008G092300--Sobic010G269100 Sobic003G126600 Sobic003G126600 Sobic008G092300--Sobic003G126600 Sobic008G112800 Sobic008G112800 Sobic008G092300--Sobic008G112800 Sobic001G102700 Sobic001G102700 Sobic008G092300--Sobic001G102700 Sobic008G092300--Sobic004G039600 Sobic010G205800 Sobic010G205800 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G390800 Sobic001G390800 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic001G541100 Sobic001G541100 Sobic009G219000--Sobic001G541100 Sobic001G323000 Sobic001G323000 Sobic009G219000--Sobic001G323000 Sobic009G219000--Sobic001G261456 Sobic008G046500 Sobic008G046500 Sobic009G219000--Sobic008G046500 Sobic001G466700 Sobic001G466700 Sobic009G219000--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic009G219000--Sobic004G274400 Sobic009G219000--Sobic009G138100 Sobic001G105500 Sobic001G105500 Sobic009G219000--Sobic001G105500 Sobic009G219000--Sobic001G371200 Sobic007G118200 Sobic007G118200 Sobic001G371200--Sobic007G118200 Sobic002G313500 Sobic002G313500 Sobic001G371200--Sobic002G313500 Sobic001G371200--Sobic001G466700 Sobic006G252700 Sobic006G252700 Sobic001G371200--Sobic006G252700 Sobic006G278700 Sobic006G278700 Sobic001G371200--Sobic006G278700 Sobic002G378200 Sobic002G378200 Sobic001G371200--Sobic002G378200 Sobic007G200600 Sobic007G200600 Sobic001G371200--Sobic007G200600 Sobic003G081000 Sobic003G081000 Sobic001G371200--Sobic003G081000 Sobic004G283000 Sobic004G283000 Sobic001G371200--Sobic004G283000 Sobic006G034800 Sobic006G034800 Sobic003G400100--Sobic006G034800 Sobic003G400100--Sobic001G261456 Sobic002G131900 Sobic002G131900 Sobic003G400100--Sobic002G131900 Sobic003G400100--Sobic002G313500 Sobic010G105600 Sobic010G105600 Sobic003G400100--Sobic010G105600 Sobic001G067900 Sobic001G067900 Sobic003G400100--Sobic001G067900 Sobic009G226400 Sobic009G226400 Sobic003G400100--Sobic009G226400 Sobic003G400100--Sobic001G371200 Sobic010G017800 Sobic010G017800 Sobic003G400100--Sobic010G017800 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic001G281600--Sobic008G179700 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic001G143500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G143500--Sobic001G466700 Sobic001G143500--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G143500--Sobic006G267300
Octagon: transcription factors


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