Gene annotation
Transcriptome id Sobic.008G112800.2,Sobic.008G112800.1
Synonym STA1, Sb08g016670, EMB2770
Functional annotation pre-mRNA-processing factor 6, putative, expressed
UniProt C6JSI5 , C5YP81
Pfam PF14559 PF06424
Panther DB PTHR11246
NCBI CDD -
KEGG Orthology K12855; PRPF6, pre-mRNA-processing factor 6
Gene Ontology GO:0005634; nucleus GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT4G03430 : pre-mRNA splicing factor-related
RAP-DB (Rice) LOC_Os10g35550.1 : pre-mRNA-processing factor 6, putative, expressed
MaizeGDB (Corn) Zm00025a025549 , Zm00025a007207 , Zm00025a054406
Brachypodium KQJ97300
Barley HORVU1Hr1G044750.3 , HORVU1Hr1G044750.2 , HORVU1Hr1G044750.1
Wheat TraesCS4D02G326200 , TraesCS5A02G500900 , TraesCS4D02G326600 , TraesCS1A02G170500
Populus PNT08239


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cDNA sequences
Sobic.008G112800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
2 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
3 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
4 Sobic.002G126500 RNA recognition motif containing protein, expressed -
5 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
6 Sobic.007G132100 myrosinase precursor, putative, expressed -
7 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
8 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
9 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
10 Sobic.006G204800 APO, putative, expressed -
11 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
12 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
13 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
14 Sobic.002G299000 ribonuclease 2-5A family protein, expressed -
15 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
16 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
17 Sobic.006G252700 protein kinase domain containing protein, expressed -
18 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
19 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
20 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G112800 Sobic008G112800 Sobic004G274200 Sobic004G274200 Sobic008G112800--Sobic004G274200 Sobic010G236400 Sobic010G236400 Sobic008G112800--Sobic010G236400 Sobic001G392300 Sobic001G392300 Sobic008G112800--Sobic001G392300 Sobic002G126500 Sobic002G126500 Sobic008G112800--Sobic002G126500 Sobic009G044800 Sobic009G044800 Sobic008G112800--Sobic009G044800 Sobic007G132100 Sobic007G132100 Sobic008G112800--Sobic007G132100 Sobic004G257100 Sobic004G257100 Sobic008G112800--Sobic004G257100 Sobic008G179700 Sobic008G179700 Sobic008G112800--Sobic008G179700 Sobic001G124200 Sobic001G124200 Sobic008G112800--Sobic001G124200 Sobic008G047800 Sobic008G047800 Sobic004G274200--Sobic008G047800 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic004G084300 Sobic004G084300 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic010G236400--Sobic002G126500 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic002G126500--Sobic010G236400 Sobic003G029100 Sobic003G029100 Sobic002G126500--Sobic003G029100 Sobic003G241200 Sobic003G241200 Sobic002G126500--Sobic003G241200 Sobic002G126500--Sobic004G084300 Sobic001G375700 Sobic001G375700 Sobic002G126500--Sobic001G375700 Sobic002G126500--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic002G126500--Sobic008G112800 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic009G044800--Sobic007G183900 Sobic007G132100--Sobic007G218000 Sobic004G072100 Sobic004G072100 Sobic007G132100--Sobic004G072100 Sobic004G039600 Sobic004G039600 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic006G131000 Sobic006G131000 Sobic007G132100--Sobic006G131000 Sobic006G012500 Sobic006G012500 Sobic007G132100--Sobic006G012500 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic010G204400 Sobic010G204400 Sobic007G132100--Sobic010G204400 Sobic004G131300 Sobic004G131300 Sobic004G257100--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic005G172500 Sobic005G172500 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic004G257100--Sobic001G227400 Sobic004G257100--Sobic008G112800 Sobic004G257100--Sobic001G392300 Sobic002G350300 Sobic002G350300 Sobic008G179700--Sobic002G350300 Sobic003G248200 Sobic003G248200 Sobic008G179700--Sobic003G248200 Sobic001G281600 Sobic001G281600 Sobic008G179700--Sobic001G281600 Sobic001G356600 Sobic001G356600 Sobic008G179700--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic008G179700--Sobic009G179700 Sobic008G179700--Sobic004G084300 Sobic008G179700--Sobic003G401100 Sobic008G179700--Sobic002G126500 Sobic001G512700 Sobic001G512700 Sobic008G179700--Sobic001G512700 Sobic010G205800 Sobic010G205800 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G390800 Sobic001G390800 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700
Octagon: transcription factors


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