Gene annotation
Transcriptome id Sobic.002G126500.1
Synonym Sb02g010900
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A1B6QAV8
Pfam PF14259 PF00076
Panther DB PTHR24012 PTHR24012:SF362
NCBI CDD KOG0123; Polyadenylate-binding protein (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G44710 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g27110.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a013546 , Zm00025a058157
Brachypodium -
Barley -
Wheat TraesCS2B02G255100 , TraesCS2B02G255100 , TraesCS2B02G255100 , TraesCS2D02G239800 , TraesCS2D02G239800 , TraesCS2A02G228600 , TraesCS2A02G228600
Populus -


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cDNA sequences
Sobic.002G126500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
2 Sobic.003G029100 frigida, putative, expressed -
3 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
4 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
5 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
6 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
7 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
8 Sobic.002G034600 zinc ion binding protein, putative, expressed -
9 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
10 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
11 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
12 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
13 Sobic.006G252700 protein kinase domain containing protein, expressed -
14 Sobic.001G083400 expressed protein -
15 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
16 Sobic.007G061000 mitotic checkpoint protein, putative, expressed K14298: RAE1, mRNA export factor
17 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
18 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
19 Sobic.007G091600 proline rich protein 3, putative, expressed -
20 Sobic.008G113100 protein binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G126500 Sobic002G126500 Sobic010G236400 Sobic010G236400 Sobic002G126500--Sobic010G236400 Sobic003G029100 Sobic003G029100 Sobic002G126500--Sobic003G029100 Sobic003G241200 Sobic003G241200 Sobic002G126500--Sobic003G241200 Sobic004G084300 Sobic004G084300 Sobic002G126500--Sobic004G084300 Sobic001G375700 Sobic001G375700 Sobic002G126500--Sobic001G375700 Sobic008G179700 Sobic008G179700 Sobic002G126500--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic008G112800 Sobic008G112800 Sobic002G126500--Sobic008G112800 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic003G029100--Sobic002G126500 Sobic009G179700 Sobic009G179700 Sobic003G029100--Sobic009G179700 Sobic007G203200 Sobic007G203200 Sobic003G029100--Sobic007G203200 Sobic003G029100--Sobic010G236400 Sobic003G029100--Sobic001G375700 Sobic001G356600 Sobic001G356600 Sobic003G029100--Sobic001G356600 Sobic007G061000 Sobic007G061000 Sobic003G029100--Sobic007G061000 Sobic006G173100 Sobic006G173100 Sobic003G029100--Sobic006G173100 Sobic006G118700 Sobic006G118700 Sobic003G029100--Sobic006G118700 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic006G032400 Sobic006G032400 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic003G241200--Sobic010G236400 Sobic003G200200 Sobic003G200200 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic001G375700--Sobic004G084300 Sobic001G375700--Sobic002G126500 Sobic001G281600 Sobic001G281600 Sobic001G375700--Sobic001G281600 Sobic003G197800 Sobic003G197800 Sobic001G375700--Sobic003G197800 Sobic001G107500 Sobic001G107500 Sobic001G375700--Sobic001G107500 Sobic007G136800 Sobic007G136800 Sobic001G375700--Sobic007G136800 Sobic007G054400 Sobic007G054400 Sobic001G375700--Sobic007G054400 Sobic008G113100 Sobic008G113100 Sobic001G375700--Sobic008G113100 Sobic001G227200 Sobic001G227200 Sobic001G375700--Sobic001G227200 Sobic002G350300 Sobic002G350300 Sobic008G179700--Sobic002G350300 Sobic003G248200 Sobic003G248200 Sobic008G179700--Sobic003G248200 Sobic008G179700--Sobic001G281600 Sobic008G179700--Sobic001G356600 Sobic008G179700--Sobic009G179700 Sobic008G179700--Sobic004G084300 Sobic008G179700--Sobic003G401100 Sobic008G179700--Sobic002G126500 Sobic001G512700 Sobic001G512700 Sobic008G179700--Sobic001G512700 Sobic007G118200 Sobic007G118200 Sobic003G081000--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic009G198100 Sobic009G198100 Sobic003G081000--Sobic009G198100 Sobic006G252700 Sobic006G252700 Sobic003G081000--Sobic006G252700 Sobic010G033400 Sobic010G033400 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic003G081000--Sobic004G350100 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic002G034600--Sobic007G118200 Sobic002G034600--Sobic002G264200 Sobic002G034600--Sobic001G356600 Sobic002G034600--Sobic010G236400 Sobic008G112800--Sobic004G274200 Sobic008G112800--Sobic010G236400 Sobic001G392300 Sobic001G392300 Sobic008G112800--Sobic001G392300 Sobic008G112800--Sobic002G126500 Sobic009G044800 Sobic009G044800 Sobic008G112800--Sobic009G044800 Sobic007G132100 Sobic007G132100 Sobic008G112800--Sobic007G132100 Sobic004G257100 Sobic004G257100 Sobic008G112800--Sobic004G257100 Sobic008G112800--Sobic008G179700 Sobic001G124200 Sobic001G124200 Sobic008G112800--Sobic001G124200
Octagon: transcription factors


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