Gene annotation
Transcriptome id Sobic.003G029100.1
Synonym Sb03g002730
Functional annotation frigida, putative, expressed
UniProt C5XLU0
Pfam PF07899
Panther DB PTHR31791 PTHR31791:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48385 : FRIGIDA-like protein
RAP-DB (Rice) LOC_Os09g07380.1 : frigida, putative, expressed
MaizeGDB (Corn) Zm00025a046188 , Zm00025a013240
Brachypodium KQJ86973
Barley -
Wheat TraesCS5B02G164900 , TraesCS5B02G164900
Populus -


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cDNA sequences
Sobic.003G029100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G126500 RNA recognition motif containing protein, expressed -
2 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
3 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
4 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
5 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
6 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
7 Sobic.007G061000 mitotic checkpoint protein, putative, expressed K14298: RAE1, mRNA export factor
8 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
9 Sobic.006G118700 MYB family transcription factor, putative, expressed -
10 Sobic.009G095100 expressed protein -
11 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
12 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
13 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
14 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
15 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
16 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
17 Sobic.009G210500 expressed protein -
18 Sobic.002G058300 ES43 protein, putative, expressed -
19 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
20 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -


Gene co-expression network
sample Sobic003G029100 Sobic003G029100 Sobic002G126500 Sobic002G126500 Sobic003G029100--Sobic002G126500 Sobic009G179700 Sobic009G179700 Sobic003G029100--Sobic009G179700 Sobic007G203200 Sobic007G203200 Sobic003G029100--Sobic007G203200 Sobic010G236400 Sobic010G236400 Sobic003G029100--Sobic010G236400 Sobic001G375700 Sobic001G375700 Sobic003G029100--Sobic001G375700 Sobic001G356600 Sobic001G356600 Sobic003G029100--Sobic001G356600 Sobic007G061000 Sobic007G061000 Sobic003G029100--Sobic007G061000 Sobic006G173100 Sobic006G173100 Sobic003G029100--Sobic006G173100 Sobic006G118700 Sobic006G118700 Sobic003G029100--Sobic006G118700 Sobic002G126500--Sobic010G236400 Sobic002G126500--Sobic003G029100 Sobic003G241200 Sobic003G241200 Sobic002G126500--Sobic003G241200 Sobic004G084300 Sobic004G084300 Sobic002G126500--Sobic004G084300 Sobic002G126500--Sobic001G375700 Sobic008G179700 Sobic008G179700 Sobic002G126500--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic008G112800 Sobic008G112800 Sobic002G126500--Sobic008G112800 Sobic002G350300 Sobic002G350300 Sobic009G179700--Sobic002G350300 Sobic009G179700--Sobic001G356600 Sobic007G078600 Sobic007G078600 Sobic009G179700--Sobic007G078600 Sobic010G018700 Sobic010G018700 Sobic009G179700--Sobic010G018700 Sobic009G179700--Sobic008G179700 Sobic007G078500 Sobic007G078500 Sobic009G179700--Sobic007G078500 Sobic009G179700--Sobic003G029100 Sobic009G179700--Sobic007G061000 Sobic001G512700 Sobic001G512700 Sobic009G179700--Sobic001G512700 Sobic010G145800 Sobic010G145800 Sobic007G203200--Sobic010G145800 Sobic009G050900 Sobic009G050900 Sobic007G203200--Sobic009G050900 Sobic001G407200 Sobic001G407200 Sobic007G203200--Sobic001G407200 Sobic001G281600 Sobic001G281600 Sobic007G203200--Sobic001G281600 Sobic010G140400 Sobic010G140400 Sobic007G203200--Sobic010G140400 Sobic010G279700 Sobic010G279700 Sobic007G203200--Sobic010G279700 Sobic005G106500 Sobic005G106500 Sobic007G203200--Sobic005G106500 Sobic003G401100 Sobic003G401100 Sobic007G203200--Sobic003G401100 Sobic007G203200--Sobic006G118700 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic010G236400--Sobic003G401100 Sobic001G375700--Sobic004G084300 Sobic001G375700--Sobic002G126500 Sobic001G375700--Sobic001G281600 Sobic003G197800 Sobic003G197800 Sobic001G375700--Sobic003G197800 Sobic001G107500 Sobic001G107500 Sobic001G375700--Sobic001G107500 Sobic007G136800 Sobic007G136800 Sobic001G375700--Sobic007G136800 Sobic007G054400 Sobic007G054400 Sobic001G375700--Sobic007G054400 Sobic008G113100 Sobic008G113100 Sobic001G375700--Sobic008G113100 Sobic001G227200 Sobic001G227200 Sobic001G375700--Sobic001G227200 Sobic004G066200 Sobic004G066200 Sobic001G356600--Sobic004G066200 Sobic003G248200 Sobic003G248200 Sobic001G356600--Sobic003G248200 Sobic001G356600--Sobic002G034600 Sobic001G356600--Sobic001G512700 Sobic009G228700 Sobic009G228700 Sobic001G356600--Sobic009G228700 Sobic001G356600--Sobic009G179700 Sobic001G356600--Sobic010G018700 Sobic001G356600--Sobic008G179700 Sobic001G356600--Sobic004G274200 Sobic001G392300 Sobic001G392300 Sobic007G061000--Sobic001G392300 Sobic001G522600 Sobic001G522600 Sobic007G061000--Sobic001G522600 Sobic009G177500 Sobic009G177500 Sobic007G061000--Sobic009G177500 Sobic007G061000--Sobic004G084300 Sobic008G047800 Sobic008G047800 Sobic007G061000--Sobic008G047800 Sobic007G061000--Sobic006G118700 Sobic007G061000--Sobic009G179700 Sobic002G134200 Sobic002G134200 Sobic007G061000--Sobic002G134200 Sobic007G157000 Sobic007G157000 Sobic007G061000--Sobic007G157000 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic002G157300 Sobic002G157300 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic006G118700--Sobic007G183900 Sobic006G118700--Sobic002G264200 Sobic010G112100 Sobic010G112100 Sobic006G118700--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600
Octagon: transcription factors


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