Gene annotation
Transcriptome id Sobic.007G203200.1
Synonym Sb07g027050, UBP1B
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5YIB3
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF379
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology K13201; TIA1, nucleolysin TIA-1/TIAR
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G17370 : oligouridylate binding protein 1B
RAP-DB (Rice) LOC_Os08g40880.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a030345 , Zm00025a005157
Brachypodium PNT68427
Barley HORVU7Hr1G052090.1 , HORVU7Hr1G052090.3 , HORVU7Hr1G052090.2
Wheat TraesCS7D02G250300 , TraesCS7A02G252200 , TraesCS7D02G250300 , TraesCS7B02G138700 , TraesCS7B02G138700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
2 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
3 Sobic.001G407200 SacI homology domain containing protein, expressed -
4 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
5 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
6 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
7 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
8 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
9 Sobic.006G118700 MYB family transcription factor, putative, expressed -
10 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
11 Sobic.001G083400 expressed protein -
12 Sobic.003G029100 frigida, putative, expressed -
13 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
14 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
15 Sobic.007G183900 ubiquitin family protein, putative, expressed -
16 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
17 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
18 Sobic.003G443100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
19 Sobic.006G194400 cyclin-T1-4, putative, expressed K15188: cyclin T
20 Sobic.009G210500 expressed protein -


Gene co-expression network
sample Sobic007G203200 Sobic007G203200 Sobic010G145800 Sobic010G145800 Sobic007G203200--Sobic010G145800 Sobic009G050900 Sobic009G050900 Sobic007G203200--Sobic009G050900 Sobic001G407200 Sobic001G407200 Sobic007G203200--Sobic001G407200 Sobic001G281600 Sobic001G281600 Sobic007G203200--Sobic001G281600 Sobic010G140400 Sobic010G140400 Sobic007G203200--Sobic010G140400 Sobic010G279700 Sobic010G279700 Sobic007G203200--Sobic010G279700 Sobic005G106500 Sobic005G106500 Sobic007G203200--Sobic005G106500 Sobic003G401100 Sobic003G401100 Sobic007G203200--Sobic003G401100 Sobic006G118700 Sobic006G118700 Sobic007G203200--Sobic006G118700 Sobic010G145800--Sobic007G203200 Sobic010G145800--Sobic010G140400 Sobic001G002600 Sobic001G002600 Sobic010G145800--Sobic001G002600 Sobic001G227200 Sobic001G227200 Sobic010G145800--Sobic001G227200 Sobic009G260500 Sobic009G260500 Sobic010G145800--Sobic009G260500 Sobic007G011600 Sobic007G011600 Sobic010G145800--Sobic007G011600 Sobic001G083400 Sobic001G083400 Sobic010G145800--Sobic001G083400 Sobic010G237900 Sobic010G237900 Sobic010G145800--Sobic010G237900 Sobic001G219600 Sobic001G219600 Sobic010G145800--Sobic001G219600 Sobic003G141500 Sobic003G141500 Sobic009G050900--Sobic003G141500 Sobic009G050900--Sobic007G203200 Sobic009G050900--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic009G050900--Sobic008G083000 Sobic009G050900--Sobic001G219600 Sobic007G071200 Sobic007G071200 Sobic009G050900--Sobic007G071200 Sobic008G011100 Sobic008G011100 Sobic009G050900--Sobic008G011100 Sobic001G493200 Sobic001G493200 Sobic009G050900--Sobic001G493200 Sobic009G050900--Sobic010G140400 Sobic009G210500 Sobic009G210500 Sobic001G407200--Sobic009G210500 Sobic008G162900 Sobic008G162900 Sobic001G407200--Sobic008G162900 Sobic005G013200 Sobic005G013200 Sobic001G407200--Sobic005G013200 Sobic002G144933 Sobic002G144933 Sobic001G407200--Sobic002G144933 Sobic010G129200 Sobic010G129200 Sobic001G407200--Sobic010G129200 Sobic010G277500 Sobic010G277500 Sobic001G407200--Sobic010G277500 Sobic009G126400 Sobic009G126400 Sobic001G407200--Sobic009G126400 Sobic004G084300 Sobic004G084300 Sobic001G407200--Sobic004G084300 Sobic008G047800 Sobic008G047800 Sobic001G407200--Sobic008G047800 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic001G281600--Sobic004G084300 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic010G140400--Sobic010G145800 Sobic010G140400--Sobic001G493200 Sobic010G140400--Sobic001G219600 Sobic006G234700 Sobic006G234700 Sobic010G140400--Sobic006G234700 Sobic010G140400--Sobic007G203200 Sobic003G443100 Sobic003G443100 Sobic010G140400--Sobic003G443100 Sobic010G140400--Sobic008G162900 Sobic010G279450 Sobic010G279450 Sobic010G140400--Sobic010G279450 Sobic010G140400--Sobic001G227200 Sobic010G279700--Sobic001G281600 Sobic010G279700--Sobic008G083000 Sobic010G279700--Sobic003G401100 Sobic001G094900 Sobic001G094900 Sobic010G279700--Sobic001G094900 Sobic007G191700 Sobic007G191700 Sobic010G279700--Sobic007G191700 Sobic010G279700--Sobic005G106500 Sobic008G092300 Sobic008G092300 Sobic010G279700--Sobic008G092300 Sobic010G279700--Sobic007G203200 Sobic004G021200 Sobic004G021200 Sobic010G279700--Sobic004G021200 Sobic005G106500--Sobic001G227200 Sobic004G140600 Sobic004G140600 Sobic005G106500--Sobic004G140600 Sobic005G106500--Sobic001G219600 Sobic005G106500--Sobic010G279700 Sobic005G106500--Sobic007G203200 Sobic005G106500--Sobic001G493200 Sobic009G024400 Sobic009G024400 Sobic005G106500--Sobic009G024400 Sobic003G266001 Sobic003G266001 Sobic005G106500--Sobic003G266001 Sobic006G194400 Sobic006G194400 Sobic005G106500--Sobic006G194400 Sobic010G236400 Sobic010G236400 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic007G183900 Sobic007G183900 Sobic006G118700--Sobic007G183900 Sobic002G264200 Sobic002G264200 Sobic006G118700--Sobic002G264200 Sobic010G112100 Sobic010G112100 Sobic006G118700--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600
Octagon: transcription factors


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