Gene annotation
Transcriptome id Sobic.001G219600.1
Synonym Sb01g019310
Functional annotation importin-beta N-terminal domain containing protein, expressed
UniProt A0A1B6QKA1
Pfam PF08389
Panther DB PTHR12363 PTHR12363:SF32
NCBI CDD KOG2081; Nuclear transport regulator
KEGG Orthology K15436; TRPO3, transportin-3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G62600 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os10g33770.1 : importin-beta N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017627 , Zm00025a006598
Brachypodium KQJ97097
Barley HORVU1Hr1G041150.30 , HORVU1Hr1G041150.6 , HORVU1Hr1G041150.7 , HORVU1Hr1G041150.4 , HORVU1Hr1G041150.3 , HORVU1Hr1G041150.1 , HORVU1Hr1G041150.8 , HORVU1Hr1G041150.9 , HORVU1Hr1G041150.5 , HORVU1Hr1G041150.18 , HORVU1Hr1G041150.19 , HORVU1Hr1G041150.14 , HORVU1Hr1G041150.15 , HORVU1Hr1G041150.16 , HORVU1Hr1G041150.17 , HORVU1Hr1G041150.10 , HORVU1Hr1G041150.11 , HORVU1Hr1G041150.13 , HORVU1Hr1G041150.21 , HORVU1Hr1G041150.20 , HORVU1Hr1G041150.23 , HORVU1Hr1G041150.22 , HORVU1Hr1G041150.25 , HORVU1Hr1G041150.24 , HORVU1Hr1G041150.27 , HORVU1Hr1G041150.26 , HORVU1Hr1G041150.29 , HORVU1Hr1G041150.28
Wheat TraesCS1B02G171900 , TraesCS1B02G171900 , TraesCS1B02G171900 , TraesCS1B02G171900 , TraesCS1B02G171900 , TraesCS1A02G154700 , TraesCS1A02G154700 , TraesCS1D02G153600 , TraesCS1D02G153600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
2 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
3 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
4 Sobic.009G047200 protein kinase domain containing protein, expressed -
5 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
6 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
7 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
8 Sobic.002G397500 SAC3/GANP family protein, expressed -
9 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
10 Sobic.001G363500 DIRP family protein, putative, expressed -
11 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
12 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
13 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
14 Sobic.009G084900 expressed protein -
15 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
16 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
17 Sobic.004G314000 expressed protein -
18 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
19 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
20 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10


Gene co-expression network
sample Sobic001G219600 Sobic001G219600 Sobic009G260500 Sobic009G260500 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic009G260500--Sobic001G219600 Sobic004G009600 Sobic004G009600 Sobic009G260500--Sobic004G009600 Sobic010G277500 Sobic010G277500 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic008G028700 Sobic008G028700 Sobic009G260500--Sobic008G028700 Sobic009G040600 Sobic009G040600 Sobic009G260500--Sobic009G040600 Sobic009G260500--Sobic002G309600 Sobic001G311500 Sobic001G311500 Sobic009G260500--Sobic001G311500 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic002G317200--Sobic001G219600 Sobic004G314000 Sobic004G314000 Sobic002G317200--Sobic004G314000 Sobic001G433800 Sobic001G433800 Sobic002G317200--Sobic001G433800 Sobic003G095900 Sobic003G095900 Sobic002G317200--Sobic003G095900 Sobic004G242400 Sobic004G242400 Sobic002G317200--Sobic004G242400 Sobic002G317200--Sobic002G397500 Sobic002G317200--Sobic005G112300 Sobic002G317200--Sobic009G260500 Sobic009G047200--Sobic001G219600 Sobic003G072200 Sobic003G072200 Sobic009G047200--Sobic003G072200 Sobic009G047200--Sobic002G397500 Sobic003G408600 Sobic003G408600 Sobic009G047200--Sobic003G408600 Sobic009G047200--Sobic001G071400 Sobic001G002000 Sobic001G002000 Sobic009G047200--Sobic001G002000 Sobic004G329400 Sobic004G329400 Sobic009G047200--Sobic004G329400 Sobic009G047200--Sobic002G317200 Sobic009G047200--Sobic002G309600 Sobic003G141500--Sobic001G219600 Sobic008G047800 Sobic008G047800 Sobic003G141500--Sobic008G047800 Sobic009G050900 Sobic009G050900 Sobic003G141500--Sobic009G050900 Sobic001G493200 Sobic001G493200 Sobic003G141500--Sobic001G493200 Sobic002G143500 Sobic002G143500 Sobic003G141500--Sobic002G143500 Sobic003G443100 Sobic003G443100 Sobic003G141500--Sobic003G443100 Sobic009G126400 Sobic009G126400 Sobic003G141500--Sobic009G126400 Sobic003G141500--Sobic001G071400 Sobic006G200600 Sobic006G200600 Sobic003G141500--Sobic006G200600 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic010G139000--Sobic005G008800 Sobic001G071400--Sobic002G134200 Sobic001G071400--Sobic002G309600 Sobic001G071400--Sobic003G280800 Sobic001G071400--Sobic008G047800 Sobic009G191000 Sobic009G191000 Sobic001G071400--Sobic009G191000 Sobic001G071400--Sobic001G219600 Sobic001G071400--Sobic005G112300 Sobic002G315200 Sobic002G315200 Sobic001G071400--Sobic002G315200 Sobic002G008900 Sobic002G008900 Sobic001G071400--Sobic002G008900 Sobic002G397500--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G397500--Sobic007G062800 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic002G397500--Sobic003G072200 Sobic002G397500--Sobic004G242400 Sobic004G276400 Sobic004G276400 Sobic002G397500--Sobic004G276400 Sobic002G397500--Sobic010G112100 Sobic001G020000--Sobic001G219600 Sobic001G020000--Sobic001G433800 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G087600 Sobic001G087600 Sobic001G020000--Sobic001G087600 Sobic002G425500 Sobic002G425500 Sobic001G020000--Sobic002G425500 Sobic001G020000--Sobic003G095900 Sobic001G352900 Sobic001G352900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300
Octagon: transcription factors


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