Gene annotation
Transcriptome id Sobic.001G020000.2,Sobic.001G020000.1
Synonym EMB1265, ESP5, CPSF100, ATCPSF100, Sb01g001930
Functional annotation metallo-beta-lactamase, putative, expressed
UniProt A0A1Z5S4B7 , C5WT39
Pfam PF00753 PF07521 PF10996 PF13299
Panther DB PTHR11203 PTHR11203:SF5
NCBI CDD -
KEGG Orthology K14402; CPSF2, cleavage and polyadenylation specificity factor subunit 2
Gene Ontology GO:0006379; mRNA cleavage GO:0006378mRNA polyadenylation GO:0005847mRNA cleavage and polyadenylation specificity factor complex


Orthologs (automatic annotation)
TAIR AT5G23880 : cleavage and polyadenylation specificity factor 100
RAP-DB (Rice) LOC_Os09g39590.1 : metallo-beta-lactamase, putative, expressed
MaizeGDB (Corn) Zm00025a028827
Brachypodium KQK02330 , PNT69812 , PNT69813 , KQK02328 , KQK02329 , KQJ91615 , KQJ91614 , KQJ91611 , KQJ91612
Barley HORVU5Hr1G109220.3 , HORVU5Hr1G109220.1 , HORVU5Hr1G109220.4 , HORVU5Hr1G109220.2
Wheat TraesCS5A02G453700 , TraesCS5A02G453700 , TraesCS5A02G453700 , TraesCS5A02G453700 , TraesCS5A02G453700 , TraesCS5A02G453700 , TraesCS5B02G462500 , TraesCS5B02G462500 , TraesCS5B02G462500 , TraesCS5B02G462500 , TraesCS5D02G464200 , TraesCS5B02G462500 , TraesCS5D02G464200 , TraesCS5D02G464200 , TraesCS5D02G464200
Populus -


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cDNA sequences
Sobic.001G020000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
2 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
3 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
4 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
5 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
6 Sobic.002G425500 ATPOT1, putative, expressed -
7 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
8 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
9 Sobic.004G124300 tesmin/TSO1-like CXC domain containing protein, expressed -
10 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
11 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
12 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
13 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
14 Sobic.009G084900 expressed protein -
15 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
16 Sobic.007G173500 growth regulator related protein, putative, expressed -
17 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
18 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
19 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
20 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2


Gene co-expression network
sample Sobic001G020000 Sobic001G020000 Sobic001G219600 Sobic001G219600 Sobic001G020000--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic001G020000--Sobic001G433800 Sobic002G317200 Sobic002G317200 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G087600 Sobic001G087600 Sobic001G020000--Sobic001G087600 Sobic002G425500 Sobic002G425500 Sobic001G020000--Sobic002G425500 Sobic003G095900 Sobic003G095900 Sobic001G020000--Sobic003G095900 Sobic001G352900 Sobic001G352900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300 Sobic009G260500 Sobic009G260500 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G219600--Sobic001G020000 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic004G048800 Sobic004G048800 Sobic002G317200--Sobic004G048800 Sobic002G317200--Sobic001G219600 Sobic004G314000 Sobic004G314000 Sobic002G317200--Sobic004G314000 Sobic002G317200--Sobic001G433800 Sobic002G317200--Sobic003G095900 Sobic002G317200--Sobic004G242400 Sobic002G317200--Sobic002G397500 Sobic002G317200--Sobic005G112300 Sobic002G317200--Sobic009G260500 Sobic001G354600--Sobic003G360400 Sobic001G354600--Sobic010G112100 Sobic001G354600--Sobic001G433800 Sobic001G354600--Sobic004G048800 Sobic007G105100 Sobic007G105100 Sobic001G354600--Sobic007G105100 Sobic001G354600--Sobic002G133300 Sobic001G063700 Sobic001G063700 Sobic001G354600--Sobic001G063700 Sobic002G068100 Sobic002G068100 Sobic001G354600--Sobic002G068100 Sobic009G044800 Sobic009G044800 Sobic001G354600--Sobic009G044800 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic010G053600 Sobic010G053600 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic001G352900--Sobic004G242400 Sobic010G001100 Sobic010G001100 Sobic001G352900--Sobic010G001100 Sobic009G109200 Sobic009G109200 Sobic001G352900--Sobic009G109200 Sobic001G352900--Sobic002G317200 Sobic001G352900--Sobic002G397500 Sobic001G352900--Sobic001G219600 Sobic003G293200 Sobic003G293200 Sobic001G352900--Sobic003G293200 Sobic004G124300--Sobic001G020000 Sobic001G035200 Sobic001G035200 Sobic004G124300--Sobic001G035200 Sobic006G261400 Sobic006G261400 Sobic004G124300--Sobic006G261400 Sobic010G059500 Sobic010G059500 Sobic004G124300--Sobic010G059500 Sobic003G363700 Sobic003G363700 Sobic004G124300--Sobic003G363700 Sobic007G173500 Sobic007G173500 Sobic004G124300--Sobic007G173500 Sobic004G124300--Sobic001G087600 Sobic009G228000 Sobic009G228000 Sobic004G124300--Sobic009G228000 Sobic001G145400 Sobic001G145400 Sobic004G124300--Sobic001G145400
Octagon: transcription factors


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