Gene annotation
Transcriptome id Sobic.002G425500.1,Sobic.002G425500.2
Synonym AtPOT1b
Functional annotation ATPOT1, putative, expressed
UniProt B7T1K9 , A0A1B6QGF2 , A0A1W0W807
Pfam PF02765
Panther DB PTHR14513
NCBI CDD KOG4757; Predicted telomere binding protein
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0000784nuclear chromosome, telomeric region GO:0000723telomere maintenance


Orthologs (automatic annotation)
TAIR AT5G06310 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os04g39280.1 : ATPOT1, putative, expressed
MaizeGDB (Corn) Zm00025a056260 , Zm00025a057378
Brachypodium -
Barley HORVU2Hr1G081450.11 , HORVU2Hr1G081450.23 , HORVU2Hr1G081450.22 , HORVU2Hr1G081450.21 , HORVU2Hr1G081450.10 , HORVU2Hr1G081450.2 , HORVU2Hr1G081450.8 , HORVU2Hr1G081450.9 , HORVU2Hr1G081450.1 , HORVU2Hr1G081450.3 , HORVU2Hr1G081450.6 , HORVU2Hr1G081450.5 , HORVU2Hr1G081450.7 , HORVU2Hr1G081450.18 , HORVU2Hr1G081450.19 , HORVU2Hr1G081450.13 , HORVU2Hr1G081450.16 , HORVU2Hr1G081450.17 , HORVU2Hr1G081450.14 , HORVU2Hr1G081450.15 , HORVU2Hr1G081450.4
Wheat TraesCS2D02G329600 , TraesCS2A02G335300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
2 Sobic.001G155400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
3 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
4 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
5 Sobic.007G183900 ubiquitin family protein, putative, expressed -
6 Sobic.004G185800 expressed protein -
7 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
8 Sobic.008G002500 RCD1, putative, expressed -
9 Sobic.004G155600 dnaJ domain containing protein, expressed -
10 Sobic.004G332400 neurochondrin family protein, putative, expressed -
11 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
12 Sobic.001G063700 expressed protein -
13 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
14 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
15 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
16 Sobic.001G540800 DNA binding protein, putative, expressed -
17 Sobic.006G040800 expressed protein -
18 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
20 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6


Gene co-expression network
sample Sobic002G425500 Sobic002G425500 Sobic001G020000 Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic001G219600 Sobic001G219600 Sobic001G020000--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic001G020000--Sobic001G433800 Sobic002G317200 Sobic002G317200 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G087600 Sobic001G087600 Sobic001G020000--Sobic001G087600 Sobic001G020000--Sobic002G425500 Sobic003G095900 Sobic003G095900 Sobic001G020000--Sobic003G095900 Sobic001G352900 Sobic001G352900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300 Sobic001G155400--Sobic002G425500 Sobic001G035200 Sobic001G035200 Sobic001G155400--Sobic001G035200 Sobic003G413100 Sobic003G413100 Sobic001G155400--Sobic003G413100 Sobic010G096000 Sobic010G096000 Sobic001G155400--Sobic010G096000 Sobic002G063900 Sobic002G063900 Sobic001G155400--Sobic002G063900 Sobic010G145800 Sobic010G145800 Sobic001G155400--Sobic010G145800 Sobic010G140400 Sobic010G140400 Sobic001G155400--Sobic010G140400 Sobic008G173100 Sobic008G173100 Sobic001G155400--Sobic008G173100 Sobic001G155400--Sobic001G020000 Sobic003G188400--Sobic001G433800 Sobic001G063700 Sobic001G063700 Sobic003G188400--Sobic001G063700 Sobic003G360400 Sobic003G360400 Sobic003G188400--Sobic003G360400 Sobic002G133300 Sobic002G133300 Sobic003G188400--Sobic002G133300 Sobic003G188400--Sobic003G095900 Sobic003G188400--Sobic002G317200 Sobic007G159900 Sobic007G159900 Sobic003G188400--Sobic007G159900 Sobic010G112100 Sobic010G112100 Sobic003G188400--Sobic010G112100 Sobic001G311500 Sobic001G311500 Sobic003G188400--Sobic001G311500 Sobic002G431400 Sobic002G431400 Sobic004G107200--Sobic002G431400 Sobic004G107200--Sobic002G425500 Sobic006G119400 Sobic006G119400 Sobic004G107200--Sobic006G119400 Sobic003G101500 Sobic003G101500 Sobic004G107200--Sobic003G101500 Sobic002G043100 Sobic002G043100 Sobic004G107200--Sobic002G043100 Sobic001G501800 Sobic001G501800 Sobic004G107200--Sobic001G501800 Sobic001G456900 Sobic001G456900 Sobic004G107200--Sobic001G456900 Sobic001G261900 Sobic001G261900 Sobic004G107200--Sobic001G261900 Sobic006G269800 Sobic006G269800 Sobic004G107200--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic007G183900--Sobic003G416700 Sobic006G118700 Sobic006G118700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic010G236400 Sobic010G236400 Sobic007G183900--Sobic010G236400 Sobic009G044800 Sobic009G044800 Sobic007G183900--Sobic009G044800 Sobic010G069100 Sobic010G069100 Sobic007G183900--Sobic010G069100 Sobic010G275500 Sobic010G275500 Sobic007G183900--Sobic010G275500 Sobic007G183900--Sobic001G354600 Sobic002G264200 Sobic002G264200 Sobic007G183900--Sobic002G264200 Sobic006G041600 Sobic006G041600 Sobic004G185800--Sobic006G041600 Sobic004G185800--Sobic001G433800 Sobic003G398700 Sobic003G398700 Sobic004G185800--Sobic003G398700 Sobic004G185800--Sobic003G188400 Sobic008G063300 Sobic008G063300 Sobic004G185800--Sobic008G063300 Sobic006G096900 Sobic006G096900 Sobic004G185800--Sobic006G096900 Sobic006G252900 Sobic006G252900 Sobic004G185800--Sobic006G252900 Sobic003G168100 Sobic003G168100 Sobic004G185800--Sobic003G168100 Sobic004G185800--Sobic002G425500 Sobic004G140600 Sobic004G140600 Sobic001G227200--Sobic004G140600 Sobic009G177500 Sobic009G177500 Sobic001G227200--Sobic009G177500 Sobic005G106500 Sobic005G106500 Sobic001G227200--Sobic005G106500 Sobic010G139000 Sobic010G139000 Sobic001G227200--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G227200--Sobic001G456900 Sobic006G040800 Sobic006G040800 Sobic008G002500--Sobic006G040800 Sobic008G002500--Sobic001G063700 Sobic008G002500--Sobic001G354600 Sobic008G002500--Sobic003G360400 Sobic009G088000 Sobic009G088000 Sobic008G002500--Sobic009G088000 Sobic008G002500--Sobic003G188400 Sobic001G522600 Sobic001G522600 Sobic008G002500--Sobic001G522600 Sobic008G002500--Sobic001G433800 Sobic004G332400 Sobic004G332400 Sobic008G002500--Sobic004G332400 Sobic006G014100 Sobic006G014100 Sobic004G155600--Sobic006G014100 Sobic006G270600 Sobic006G270600 Sobic004G155600--Sobic006G270600 Sobic006G080400 Sobic006G080400 Sobic004G155600--Sobic006G080400 Sobic004G355800 Sobic004G355800 Sobic004G155600--Sobic004G355800 Sobic004G155600--Sobic002G425500 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic002G145800 Sobic002G145800 Sobic004G155600--Sobic002G145800 Sobic001G002600 Sobic001G002600 Sobic004G155600--Sobic001G002600
Octagon: transcription factors


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