Gene annotation
Transcriptome id Sobic.002G145800.1,Sobic.002G145800.5,Sobic.002G145800.2,Sobic.002G145800.4,Sobic.002G145800.6,Sobic.002G145800.3
Synonym FCA, Sb02g014690
Functional annotation flowering time control protein FCA, putative, expressed
UniProt A0A1B6QBC6 , A0A1B6QB91 , A0A1B6QBB0 , A0A1B6QBA4
Pfam PF00397 PF00076
Panther DB PTHR24012 PTHR24012:SF382
NCBI CDD KOG0144; RNA-binding protein CUGBP1/BRUNO (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G16280 : RNA binding;abscisic acid binding
RAP-DB (Rice) LOC_Os09g03610.1,LOC_Os09g03610.2 : flowering time control protein FCA, putative, expressed
MaizeGDB (Corn) Zm00025a013446
Brachypodium PNT62821 , KQJ86963 , KQJ86962
Barley HORVU5Hr1G050820.4 , HORVU5Hr1G050820.6 , HORVU5Hr1G050820.7 , HORVU5Hr1G050820.2 , HORVU5Hr1G050820.3 , HORVU5Hr1G050820.8 , HORVU5Hr1G050820.9 , HORVU5Hr1G050820.16 , HORVU5Hr1G050820.17 , HORVU5Hr1G050820.14 , HORVU5Hr1G050820.15 , HORVU5Hr1G050820.12 , HORVU5Hr1G050820.13 , HORVU5Hr1G050820.10 , HORVU5Hr1G050820.11 , HORVU5Hr1G050820.18
Wheat TraesCS5B02G160200 , TraesCS5D02G167800 , TraesCS5A02G162800 , TraesCS5A02G162800 , TraesCS5A02G162800
Populus -


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cDNA sequences
Sobic.002G145800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
2 Sobic.003G416700 homeobox domain containing protein, expressed -
3 Sobic.007G183300 expressed protein -
4 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
5 Sobic.001G051700 expressed protein -
6 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
7 Sobic.008G147200 tubulin, putative, expressed -
8 Sobic.001G023000 kelch motif family protein, putative, expressed -
9 Sobic.010G186600 expressed protein -
10 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
11 Sobic.007G183900 ubiquitin family protein, putative, expressed -
12 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
13 Sobic.003G052800 RST1, putative, expressed -
14 Sobic.004G155600 dnaJ domain containing protein, expressed -
15 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
16 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
17 Sobic.010G174700 expressed protein -
18 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
19 Sobic.002G425500 ATPOT1, putative, expressed -
20 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G145800 Sobic002G145800 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic008G147200 Sobic008G147200 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic002G154000 Sobic002G154000 Sobic003G416700--Sobic002G154000 Sobic002G264200 Sobic002G264200 Sobic003G416700--Sobic002G264200 Sobic001G461400 Sobic001G461400 Sobic003G416700--Sobic001G461400 Sobic007G183900 Sobic007G183900 Sobic003G416700--Sobic007G183900 Sobic003G416700--Sobic001G051700 Sobic003G360400 Sobic003G360400 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic001G063700 Sobic001G063700 Sobic003G416700--Sobic001G063700 Sobic010G275500 Sobic010G275500 Sobic003G416700--Sobic010G275500 Sobic005G200800 Sobic005G200800 Sobic007G183300--Sobic005G200800 Sobic007G183300--Sobic002G145800 Sobic007G183300--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic007G183300--Sobic003G214600 Sobic010G279900 Sobic010G279900 Sobic007G183300--Sobic010G279900 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic007G183300--Sobic001G051700 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic001G087600--Sobic002G145800 Sobic001G087600--Sobic002G154000 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic001G051700--Sobic003G416700 Sobic001G051700--Sobic002G145800 Sobic006G267600 Sobic006G267600 Sobic001G051700--Sobic006G267600 Sobic001G051700--Sobic002G154000 Sobic006G261400 Sobic006G261400 Sobic001G051700--Sobic006G261400 Sobic006G224800 Sobic006G224800 Sobic001G051700--Sobic006G224800 Sobic001G051700--Sobic007G183300 Sobic001G051700--Sobic010G275500 Sobic001G051700--Sobic003G062300 Sobic003G062300--Sobic006G224800 Sobic004G309900 Sobic004G309900 Sobic003G062300--Sobic004G309900 Sobic003G062300--Sobic002G145800 Sobic003G062300--Sobic003G416700 Sobic003G062300--Sobic005G220000 Sobic003G062300--Sobic001G051700 Sobic002G164200 Sobic002G164200 Sobic003G062300--Sobic002G164200 Sobic003G062300--Sobic003G214600 Sobic003G062300--Sobic007G183300 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic008G147200--Sobic006G269800 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic001G346900 Sobic001G346900 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic001G023000--Sobic002G145800 Sobic001G493200 Sobic001G493200 Sobic001G023000--Sobic001G493200 Sobic010G279700 Sobic010G279700 Sobic001G023000--Sobic010G279700 Sobic001G023000--Sobic001G087600 Sobic008G082500 Sobic008G082500 Sobic001G023000--Sobic008G082500 Sobic001G145400 Sobic001G145400 Sobic001G023000--Sobic001G145400 Sobic007G071200 Sobic007G071200 Sobic001G023000--Sobic007G071200 Sobic003G405500 Sobic003G405500 Sobic001G023000--Sobic003G405500 Sobic008G164600 Sobic008G164600 Sobic001G023000--Sobic008G164600 Sobic009G255600 Sobic009G255600 Sobic010G186600--Sobic009G255600 Sobic010G186600--Sobic008G147200 Sobic010G186600--Sobic002G145800 Sobic010G186600--Sobic001G291800 Sobic002G005000 Sobic002G005000 Sobic010G186600--Sobic002G005000 Sobic001G023800 Sobic001G023800 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic001G052400 Sobic001G052400 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200
Octagon: transcription factors


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