Gene annotation
Transcriptome id Sobic.007G011600.3,Sobic.007G011600.1,Sobic.007G011600.2
Synonym Sb07g001130
Functional annotation KH domain-containing protein, putative, expressed
UniProt A0A1B6PEU9 , A0A1B6PEY0 , A0A1Z5R7T5
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF145
NCBI CDD KOG1676; K-homology type RNA binding proteins KOG0119Splicing factor 1/branch point binding protein (RRM superfamily)
KEGG Orthology K13210; far upstream element-binding protein
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT4G10070 : KH domain-containing protein
RAP-DB (Rice) LOC_Os08g01930.1 : KH domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039133 , Zm00025a030288 , Zm00025a040212
Brachypodium -
Barley HORVU7Hr1G076780.7 , HORVU7Hr1G076780.6 , HORVU7Hr1G076780.5 , HORVU7Hr1G076780.4 , HORVU7Hr1G076780.2 , HORVU7Hr1G076780.1 , HORVU7Hr1G076780.9 , HORVU7Hr1G076780.8 , HORVU7Hr1G076780.13 , HORVU7Hr1G076780.12 , HORVU7Hr1G076780.11 , HORVU7Hr1G076780.10
Wheat TraesCS7D02G317400 , TraesCS7B02G221500 , TraesCS7A02G320500
Populus -


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cDNA sequences
Sobic.007G011600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
2 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
3 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
4 Sobic.006G222300 MBTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
6 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
7 Sobic.007G091600 proline rich protein 3, putative, expressed -
8 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
9 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
10 Sobic.007G054400 FAR1 family protein, expressed -
11 Sobic.007G027700 expressed protein -
12 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
13 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
14 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
15 Sobic.001G540800 DNA binding protein, putative, expressed -
16 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
17 Sobic.004G156500 expressed protein -
18 Sobic.002G309200 FAR1 family protein, expressed -
19 Sobic.006G118700 MYB family transcription factor, putative, expressed -
20 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6


Gene co-expression network
sample Sobic007G011600 Sobic007G011600 Sobic004G096500 Sobic004G096500 Sobic007G011600--Sobic004G096500 Sobic010G145800 Sobic010G145800 Sobic007G011600--Sobic010G145800 Sobic002G145800 Sobic002G145800 Sobic007G011600--Sobic002G145800 Sobic006G222300 Sobic006G222300 Sobic007G011600--Sobic006G222300 Sobic010G279700 Sobic010G279700 Sobic007G011600--Sobic010G279700 Sobic005G220000 Sobic005G220000 Sobic007G011600--Sobic005G220000 Sobic007G091600 Sobic007G091600 Sobic007G011600--Sobic007G091600 Sobic005G079800 Sobic005G079800 Sobic007G011600--Sobic005G079800 Sobic008G011100 Sobic008G011100 Sobic007G011600--Sobic008G011100 Sobic004G096500--Sobic007G011600 Sobic001G303675 Sobic001G303675 Sobic004G096500--Sobic001G303675 Sobic004G096500--Sobic006G222300 Sobic006G052300 Sobic006G052300 Sobic004G096500--Sobic006G052300 Sobic004G096500--Sobic008G011100 Sobic002G259800 Sobic002G259800 Sobic004G096500--Sobic002G259800 Sobic001G306900 Sobic001G306900 Sobic004G096500--Sobic001G306900 Sobic004G096500--Sobic005G079800 Sobic001G261496 Sobic001G261496 Sobic004G096500--Sobic001G261496 Sobic007G203200 Sobic007G203200 Sobic010G145800--Sobic007G203200 Sobic010G140400 Sobic010G140400 Sobic010G145800--Sobic010G140400 Sobic001G002600 Sobic001G002600 Sobic010G145800--Sobic001G002600 Sobic001G227200 Sobic001G227200 Sobic010G145800--Sobic001G227200 Sobic009G260500 Sobic009G260500 Sobic010G145800--Sobic009G260500 Sobic010G145800--Sobic007G011600 Sobic001G083400 Sobic001G083400 Sobic010G145800--Sobic001G083400 Sobic010G237900 Sobic010G237900 Sobic010G145800--Sobic010G237900 Sobic001G219600 Sobic001G219600 Sobic010G145800--Sobic001G219600 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic007G183300 Sobic007G183300 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic008G147200 Sobic008G147200 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600 Sobic009G083500 Sobic009G083500 Sobic006G222300--Sobic009G083500 Sobic001G311500 Sobic001G311500 Sobic006G222300--Sobic001G311500 Sobic007G159900 Sobic007G159900 Sobic006G222300--Sobic007G159900 Sobic006G222300--Sobic004G096500 Sobic010G136600 Sobic010G136600 Sobic006G222300--Sobic010G136600 Sobic010G028800 Sobic010G028800 Sobic006G222300--Sobic010G028800 Sobic009G086900 Sobic009G086900 Sobic006G222300--Sobic009G086900 Sobic001G241200 Sobic001G241200 Sobic006G222300--Sobic001G241200 Sobic002G264200 Sobic002G264200 Sobic006G222300--Sobic002G264200 Sobic001G281600 Sobic001G281600 Sobic010G279700--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic010G279700--Sobic008G083000 Sobic003G401100 Sobic003G401100 Sobic010G279700--Sobic003G401100 Sobic001G094900 Sobic001G094900 Sobic010G279700--Sobic001G094900 Sobic007G191700 Sobic007G191700 Sobic010G279700--Sobic007G191700 Sobic005G106500 Sobic005G106500 Sobic010G279700--Sobic005G106500 Sobic008G092300 Sobic008G092300 Sobic010G279700--Sobic008G092300 Sobic010G279700--Sobic007G203200 Sobic004G021200 Sobic004G021200 Sobic010G279700--Sobic004G021200 Sobic001G111600 Sobic001G111600 Sobic005G220000--Sobic001G111600 Sobic005G220000--Sobic002G145800 Sobic007G183900 Sobic007G183900 Sobic005G220000--Sobic007G183900 Sobic005G128400 Sobic005G128400 Sobic005G220000--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic005G220000--Sobic003G293200 Sobic005G220000--Sobic007G183300 Sobic005G220000--Sobic003G062300 Sobic010G085200 Sobic010G085200 Sobic005G220000--Sobic010G085200 Sobic001G026500 Sobic001G026500 Sobic005G220000--Sobic001G026500 Sobic006G118700 Sobic006G118700 Sobic007G091600--Sobic006G118700 Sobic007G091600--Sobic007G191700 Sobic007G091600--Sobic002G264200 Sobic004G084300 Sobic004G084300 Sobic007G091600--Sobic004G084300 Sobic005G021500 Sobic005G021500 Sobic007G091600--Sobic005G021500 Sobic010G236400 Sobic010G236400 Sobic007G091600--Sobic010G236400 Sobic009G177500 Sobic009G177500 Sobic007G091600--Sobic009G177500 Sobic004G129300 Sobic004G129300 Sobic007G091600--Sobic004G129300 Sobic003G394300 Sobic003G394300 Sobic007G091600--Sobic003G394300 Sobic003G438900 Sobic003G438900 Sobic005G079800--Sobic003G438900 Sobic001G253200 Sobic001G253200 Sobic005G079800--Sobic001G253200 Sobic005G079800--Sobic007G191700 Sobic002G153700 Sobic002G153700 Sobic005G079800--Sobic002G153700 Sobic005G079800--Sobic005G021500 Sobic003G427100 Sobic003G427100 Sobic005G079800--Sobic003G427100 Sobic007G054400 Sobic007G054400 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic005G079800--Sobic004G096500 Sobic008G011100--Sobic001G219600 Sobic004G039200 Sobic004G039200 Sobic008G011100--Sobic004G039200 Sobic004G087600 Sobic004G087600 Sobic008G011100--Sobic004G087600 Sobic002G031400 Sobic002G031400 Sobic008G011100--Sobic002G031400 Sobic008G011100--Sobic009G260500 Sobic004G018300 Sobic004G018300 Sobic008G011100--Sobic004G018300 Sobic001G167200 Sobic001G167200 Sobic008G011100--Sobic001G167200 Sobic009G065100 Sobic009G065100 Sobic008G011100--Sobic009G065100 Sobic008G011100--Sobic001G311500
Octagon: transcription factors


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