Gene annotation
Transcriptome id Sobic.004G096500.1
Synonym Sb04g007950
Functional annotation KH domain-containing protein, putative, expressed
UniProt C5XYG2
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF171
NCBI CDD KOG1676; K-homology type RNA binding proteins
KEGG Orthology K13210; far upstream element-binding protein
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G25970 : KH domain-containing protein
RAP-DB (Rice) LOC_Os02g13130.1 : KH domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020157 , Zm00025a034542
Brachypodium KQJ94090
Barley HORVU6Hr1G040310.11 , HORVU6Hr1G040310.8 , HORVU6Hr1G040310.9 , HORVU6Hr1G040310.1 , HORVU6Hr1G040310.2 , HORVU6Hr1G040310.3 , HORVU6Hr1G040310.4 , HORVU6Hr1G040310.5 , HORVU6Hr1G040310.6 , HORVU6Hr1G040310.7
Wheat TraesCS6D02G178200 , TraesCS6D02G178200 , TraesCS6D02G178200 , TraesCS6D02G178200 , TraesCS6B02G216100 , TraesCS6B02G216100 , TraesCS6A02G190000 , TraesCS6A02G190000 , TraesCS6A02G190000
Populus -


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cDNA sequences
Sobic.004G096500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
2 Sobic.001G303675 - -
3 Sobic.006G222300 MBTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.006G052300 dnaJ domain containing protein, expressed -
5 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
6 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
7 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
8 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
9 Sobic.001G261496 - -
10 Sobic.007G054400 FAR1 family protein, expressed -
11 Sobic.004G246700 zinc finger family protein, putative, expressed -
12 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
13 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
14 Sobic.010G136600 - -
15 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
16 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
17 Sobic.009G100050 - -
18 Sobic.002G309200 FAR1 family protein, expressed -
19 Sobic.009G086900 expressed protein -
20 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2


Gene co-expression network
sample Sobic004G096500 Sobic004G096500 Sobic007G011600 Sobic007G011600 Sobic004G096500--Sobic007G011600 Sobic001G303675 Sobic001G303675 Sobic004G096500--Sobic001G303675 Sobic006G222300 Sobic006G222300 Sobic004G096500--Sobic006G222300 Sobic006G052300 Sobic006G052300 Sobic004G096500--Sobic006G052300 Sobic008G011100 Sobic008G011100 Sobic004G096500--Sobic008G011100 Sobic002G259800 Sobic002G259800 Sobic004G096500--Sobic002G259800 Sobic001G306900 Sobic001G306900 Sobic004G096500--Sobic001G306900 Sobic005G079800 Sobic005G079800 Sobic004G096500--Sobic005G079800 Sobic001G261496 Sobic001G261496 Sobic004G096500--Sobic001G261496 Sobic007G011600--Sobic004G096500 Sobic010G145800 Sobic010G145800 Sobic007G011600--Sobic010G145800 Sobic002G145800 Sobic002G145800 Sobic007G011600--Sobic002G145800 Sobic007G011600--Sobic006G222300 Sobic010G279700 Sobic010G279700 Sobic007G011600--Sobic010G279700 Sobic005G220000 Sobic005G220000 Sobic007G011600--Sobic005G220000 Sobic007G091600 Sobic007G091600 Sobic007G011600--Sobic007G091600 Sobic007G011600--Sobic005G079800 Sobic007G011600--Sobic008G011100 Sobic001G303675--Sobic001G306900 Sobic001G094000 Sobic001G094000 Sobic001G303675--Sobic001G094000 Sobic002G144933 Sobic002G144933 Sobic001G303675--Sobic002G144933 Sobic009G100050 Sobic009G100050 Sobic001G303675--Sobic009G100050 Sobic005G015900 Sobic005G015900 Sobic001G303675--Sobic005G015900 Sobic002G320500 Sobic002G320500 Sobic001G303675--Sobic002G320500 Sobic001G303675--Sobic004G096500 Sobic002G151600 Sobic002G151600 Sobic001G303675--Sobic002G151600 Sobic003G170100 Sobic003G170100 Sobic001G303675--Sobic003G170100 Sobic009G083500 Sobic009G083500 Sobic006G222300--Sobic009G083500 Sobic001G311500 Sobic001G311500 Sobic006G222300--Sobic001G311500 Sobic007G159900 Sobic007G159900 Sobic006G222300--Sobic007G159900 Sobic006G222300--Sobic004G096500 Sobic010G136600 Sobic010G136600 Sobic006G222300--Sobic010G136600 Sobic010G028800 Sobic010G028800 Sobic006G222300--Sobic010G028800 Sobic009G086900 Sobic009G086900 Sobic006G222300--Sobic009G086900 Sobic001G241200 Sobic001G241200 Sobic006G222300--Sobic001G241200 Sobic002G264200 Sobic002G264200 Sobic006G222300--Sobic002G264200 Sobic004G264300 Sobic004G264300 Sobic006G052300--Sobic004G264300 Sobic004G009600 Sobic004G009600 Sobic006G052300--Sobic004G009600 Sobic006G220000 Sobic006G220000 Sobic006G052300--Sobic006G220000 Sobic007G054400 Sobic007G054400 Sobic006G052300--Sobic007G054400 Sobic006G052300--Sobic004G096500 Sobic006G210000 Sobic006G210000 Sobic006G052300--Sobic006G210000 Sobic004G145500 Sobic004G145500 Sobic006G052300--Sobic004G145500 Sobic008G100100 Sobic008G100100 Sobic006G052300--Sobic008G100100 Sobic010G277500 Sobic010G277500 Sobic006G052300--Sobic010G277500 Sobic001G219600 Sobic001G219600 Sobic008G011100--Sobic001G219600 Sobic004G039200 Sobic004G039200 Sobic008G011100--Sobic004G039200 Sobic004G087600 Sobic004G087600 Sobic008G011100--Sobic004G087600 Sobic002G031400 Sobic002G031400 Sobic008G011100--Sobic002G031400 Sobic009G260500 Sobic009G260500 Sobic008G011100--Sobic009G260500 Sobic004G018300 Sobic004G018300 Sobic008G011100--Sobic004G018300 Sobic001G167200 Sobic001G167200 Sobic008G011100--Sobic001G167200 Sobic009G065100 Sobic009G065100 Sobic008G011100--Sobic009G065100 Sobic008G011100--Sobic001G311500 Sobic009G195200 Sobic009G195200 Sobic002G259800--Sobic009G195200 Sobic002G259800--Sobic001G306900 Sobic002G259800--Sobic005G015900 Sobic003G394300 Sobic003G394300 Sobic002G259800--Sobic003G394300 Sobic006G248500 Sobic006G248500 Sobic002G259800--Sobic006G248500 Sobic001G246500 Sobic001G246500 Sobic002G259800--Sobic001G246500 Sobic005G084100 Sobic005G084100 Sobic002G259800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G259800--Sobic002G423200 Sobic004G156500 Sobic004G156500 Sobic002G259800--Sobic004G156500 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic010G065300 Sobic010G065300 Sobic001G306900--Sobic010G065300 Sobic001G306900--Sobic001G303675 Sobic007G065400 Sobic007G065400 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic001G306900--Sobic004G145500 Sobic002G153700 Sobic002G153700 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G306900--Sobic001G094000 Sobic003G438900 Sobic003G438900 Sobic005G079800--Sobic003G438900 Sobic001G253200 Sobic001G253200 Sobic005G079800--Sobic001G253200 Sobic007G191700 Sobic007G191700 Sobic005G079800--Sobic007G191700 Sobic005G079800--Sobic002G153700 Sobic005G021500 Sobic005G021500 Sobic005G079800--Sobic005G021500 Sobic003G427100 Sobic003G427100 Sobic005G079800--Sobic003G427100 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic005G079800--Sobic004G096500 Sobic001G261496--Sobic006G222300 Sobic003G205801 Sobic003G205801 Sobic001G261496--Sobic003G205801 Sobic001G261496--Sobic004G096500 Sobic010G143200 Sobic010G143200 Sobic001G261496--Sobic010G143200 Sobic001G261496--Sobic002G144933 Sobic009G102500 Sobic009G102500 Sobic001G261496--Sobic009G102500 Sobic003G084900 Sobic003G084900 Sobic001G261496--Sobic003G084900 Sobic001G228700 Sobic001G228700 Sobic001G261496--Sobic001G228700 Sobic001G261496--Sobic009G083500
Octagon: transcription factors


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