Gene annotation
Transcriptome id Sobic.003G427100.1
Synonym FY, Sb03g045910
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XHW5
Pfam PF00400
Panther DB PTHR22836
NCBI CDD -
KEGG Orthology K15542; polyadenylation factor subunit 2
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G13480 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os01g72220.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025988 , Zm00025a037604
Brachypodium KQK11556
Barley HORVU5Hr1G077690.9 , HORVU5Hr1G077690.2 , HORVU5Hr1G077690.3 , HORVU5Hr1G077690.4 , HORVU5Hr1G077690.5 , HORVU5Hr1G077690.6 , HORVU5Hr1G077690.7 , HORVU5Hr1G077690.10 , HORVU5Hr1G077690.11 , HORVU5Hr1G077690.8 , HORVU5Hr1G077690.1
Wheat TraesCS5B02G292800 , TraesCS5D02G300900 , TraesCS5B02G292800 , TraesCS5A02G293600 , TraesCS5A02G293600 , TraesCS5D02G300900
Populus -


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cDNA sequences
Sobic.003G427100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
2 Sobic.007G044100 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
3 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
4 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
5 Sobic.001G398800 FHA domain containing protein, putative, expressed -
6 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
7 Sobic.004G156500 expressed protein -
8 Sobic.003G438900 FYVE zinc finger domain containing protein, expressed -
9 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
10 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
11 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
12 Sobic.007G091600 proline rich protein 3, putative, expressed -
13 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
14 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
15 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
16 Sobic.007G183900 ubiquitin family protein, putative, expressed -
17 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
18 Sobic.004G155600 dnaJ domain containing protein, expressed -
19 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
20 Sobic.010G279900 PHD-finger domain containing protein, expressed -


Gene co-expression network
sample Sobic003G427100 Sobic003G427100 Sobic005G079800 Sobic005G079800 Sobic003G427100--Sobic005G079800 Sobic007G044100 Sobic007G044100 Sobic003G427100--Sobic007G044100 Sobic003G409200 Sobic003G409200 Sobic003G427100--Sobic003G409200 Sobic004G285000 Sobic004G285000 Sobic003G427100--Sobic004G285000 Sobic001G398800 Sobic001G398800 Sobic003G427100--Sobic001G398800 Sobic002G153700 Sobic002G153700 Sobic003G427100--Sobic002G153700 Sobic004G156500 Sobic004G156500 Sobic003G427100--Sobic004G156500 Sobic003G438900 Sobic003G438900 Sobic003G427100--Sobic003G438900 Sobic003G307000 Sobic003G307000 Sobic003G427100--Sobic003G307000 Sobic005G079800--Sobic003G438900 Sobic001G253200 Sobic001G253200 Sobic005G079800--Sobic001G253200 Sobic007G191700 Sobic007G191700 Sobic005G079800--Sobic007G191700 Sobic005G079800--Sobic002G153700 Sobic005G021500 Sobic005G021500 Sobic005G079800--Sobic005G021500 Sobic005G079800--Sobic003G427100 Sobic007G054400 Sobic007G054400 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic004G096500 Sobic004G096500 Sobic005G079800--Sobic004G096500 Sobic007G044100--Sobic003G427100 Sobic007G044100--Sobic004G285000 Sobic004G111000 Sobic004G111000 Sobic007G044100--Sobic004G111000 Sobic001G090800 Sobic001G090800 Sobic007G044100--Sobic001G090800 Sobic007G044100--Sobic003G307000 Sobic001G134300 Sobic001G134300 Sobic007G044100--Sobic001G134300 Sobic007G044100--Sobic003G409200 Sobic010G279900 Sobic010G279900 Sobic007G044100--Sobic010G279900 Sobic002G234600 Sobic002G234600 Sobic007G044100--Sobic002G234600 Sobic001G346900 Sobic001G346900 Sobic003G409200--Sobic001G346900 Sobic010G215900 Sobic010G215900 Sobic003G409200--Sobic010G215900 Sobic003G409200--Sobic004G111000 Sobic008G057000 Sobic008G057000 Sobic003G409200--Sobic008G057000 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic003G409200--Sobic004G285000 Sobic003G409200--Sobic010G279900 Sobic002G145800 Sobic002G145800 Sobic003G409200--Sobic002G145800 Sobic004G086200 Sobic004G086200 Sobic004G285000--Sobic004G086200 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic004G285000--Sobic010G215900 Sobic004G285000--Sobic003G409200 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic004G048800 Sobic004G048800 Sobic001G398800--Sobic004G048800 Sobic001G026200 Sobic001G026200 Sobic001G398800--Sobic001G026200 Sobic003G360400 Sobic003G360400 Sobic001G398800--Sobic003G360400 Sobic001G398800--Sobic001G134300 Sobic002G071500 Sobic002G071500 Sobic001G398800--Sobic002G071500 Sobic010G001100 Sobic010G001100 Sobic001G398800--Sobic010G001100 Sobic007G090430 Sobic007G090430 Sobic001G398800--Sobic007G090430 Sobic010G065300 Sobic010G065300 Sobic001G398800--Sobic010G065300 Sobic004G039200 Sobic004G039200 Sobic001G398800--Sobic004G039200 Sobic002G153700--Sobic002G071500 Sobic005G207500 Sobic005G207500 Sobic002G153700--Sobic005G207500 Sobic008G009700 Sobic008G009700 Sobic002G153700--Sobic008G009700 Sobic002G153700--Sobic010G065300 Sobic009G119000 Sobic009G119000 Sobic002G153700--Sobic009G119000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic002G153700--Sobic010G069100 Sobic001G306900 Sobic001G306900 Sobic002G153700--Sobic001G306900 Sobic008G100100 Sobic008G100100 Sobic004G156500--Sobic008G100100 Sobic004G156500--Sobic010G065300 Sobic004G156500--Sobic001G134300 Sobic004G156500--Sobic001G306900 Sobic006G118700 Sobic006G118700 Sobic004G156500--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G156500--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G156500--Sobic003G416700 Sobic002G357100 Sobic002G357100 Sobic004G156500--Sobic002G357100 Sobic002G259800 Sobic002G259800 Sobic004G156500--Sobic002G259800 Sobic003G438900--Sobic005G079800 Sobic003G438900--Sobic002G153700 Sobic003G438900--Sobic003G427100 Sobic003G438900--Sobic007G191700 Sobic003G438900--Sobic007G054400 Sobic001G433300 Sobic001G433300 Sobic003G438900--Sobic001G433300 Sobic007G041300 Sobic007G041300 Sobic003G438900--Sobic007G041300 Sobic004G088200 Sobic004G088200 Sobic003G438900--Sobic004G088200 Sobic003G438900--Sobic001G253200 Sobic007G000100 Sobic007G000100 Sobic003G307000--Sobic007G000100 Sobic003G307000--Sobic002G153700 Sobic003G445400 Sobic003G445400 Sobic003G307000--Sobic003G445400 Sobic009G000500 Sobic009G000500 Sobic003G307000--Sobic009G000500 Sobic001G511500 Sobic001G511500 Sobic003G307000--Sobic001G511500 Sobic003G307000--Sobic001G306900 Sobic004G031700 Sobic004G031700 Sobic003G307000--Sobic004G031700 Sobic003G394300 Sobic003G394300 Sobic003G307000--Sobic003G394300 Sobic003G307000--Sobic010G065300
Octagon: transcription factors


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