Gene annotation
Transcriptome id Sobic.003G438900.1
Synonym Sb03g046900
Functional annotation FYVE zinc finger domain containing protein, expressed
UniProt A0A1B6Q8F4
Pfam PF01363 PF13713 PF08381 PF00415
Panther DB PTHR22870 PTHR22870:SF199
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42140 : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
RAP-DB (Rice) LOC_Os01g73410.1 : FYVE zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020532 , Zm00025a039066
Brachypodium KQK11687
Barley HORVU1Hr1G002740.2 , HORVU1Hr1G002740.3 , HORVU1Hr1G002740.1 , HORVU1Hr1G002740.4 , HORVU3Hr1G112690.5 , HORVU3Hr1G112690.1 , HORVU3Hr1G112690.2 , HORVU3Hr1G112690.3
Wheat TraesCS3B02G581600 , TraesCS1B02G024400 , TraesCS3B02G581600 , TraesCS3B02G581600 , TraesCS3D02G522600 , TraesCS3A02G512900 , TraesCS3A02G512900 , TraesCS1D02G019900 , TraesCS1A02G020400 , TraesCS3D02G522600
Populus -


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cDNA sequences
Sobic.003G438900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
2 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
3 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
4 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
5 Sobic.007G054400 FAR1 family protein, expressed -
6 Sobic.001G433300 SWIM zinc finger family protein, putative, expressed -
7 Sobic.007G041300 expressed protein -
8 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
9 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
10 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
11 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
12 Sobic.004G156500 expressed protein -
13 Sobic.003G293200 plus-3 domain containing protein, expressed -
14 Sobic.003G266001 - -
15 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
16 Sobic.006G118700 MYB family transcription factor, putative, expressed -
17 Sobic.007G183300 expressed protein -
18 Sobic.003G101500 dnaJ domain containing protein, expressed -
19 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
20 Sobic.002G145800 flowering time control protein FCA, putative, expressed -


Gene co-expression network
sample Sobic003G438900 Sobic003G438900 Sobic005G079800 Sobic005G079800 Sobic003G438900--Sobic005G079800 Sobic002G153700 Sobic002G153700 Sobic003G438900--Sobic002G153700 Sobic003G427100 Sobic003G427100 Sobic003G438900--Sobic003G427100 Sobic007G191700 Sobic007G191700 Sobic003G438900--Sobic007G191700 Sobic007G054400 Sobic007G054400 Sobic003G438900--Sobic007G054400 Sobic001G433300 Sobic001G433300 Sobic003G438900--Sobic001G433300 Sobic007G041300 Sobic007G041300 Sobic003G438900--Sobic007G041300 Sobic004G088200 Sobic004G088200 Sobic003G438900--Sobic004G088200 Sobic001G253200 Sobic001G253200 Sobic003G438900--Sobic001G253200 Sobic005G079800--Sobic003G438900 Sobic005G079800--Sobic001G253200 Sobic005G079800--Sobic007G191700 Sobic005G079800--Sobic002G153700 Sobic005G021500 Sobic005G021500 Sobic005G079800--Sobic005G021500 Sobic005G079800--Sobic003G427100 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic004G096500 Sobic004G096500 Sobic005G079800--Sobic004G096500 Sobic002G071500 Sobic002G071500 Sobic002G153700--Sobic002G071500 Sobic005G207500 Sobic005G207500 Sobic002G153700--Sobic005G207500 Sobic008G009700 Sobic008G009700 Sobic002G153700--Sobic008G009700 Sobic010G065300 Sobic010G065300 Sobic002G153700--Sobic010G065300 Sobic009G119000 Sobic009G119000 Sobic002G153700--Sobic009G119000 Sobic003G307000 Sobic003G307000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic002G153700--Sobic010G069100 Sobic001G306900 Sobic001G306900 Sobic002G153700--Sobic001G306900 Sobic003G427100--Sobic005G079800 Sobic007G044100 Sobic007G044100 Sobic003G427100--Sobic007G044100 Sobic003G409200 Sobic003G409200 Sobic003G427100--Sobic003G409200 Sobic004G285000 Sobic004G285000 Sobic003G427100--Sobic004G285000 Sobic001G398800 Sobic001G398800 Sobic003G427100--Sobic001G398800 Sobic003G427100--Sobic002G153700 Sobic004G156500 Sobic004G156500 Sobic003G427100--Sobic004G156500 Sobic003G427100--Sobic003G438900 Sobic003G427100--Sobic003G307000 Sobic010G237900 Sobic010G237900 Sobic007G191700--Sobic010G237900 Sobic007G091600 Sobic007G091600 Sobic007G191700--Sobic007G091600 Sobic004G129300 Sobic004G129300 Sobic007G191700--Sobic004G129300 Sobic001G395100 Sobic001G395100 Sobic007G191700--Sobic001G395100 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic007G191700--Sobic006G118700 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600 Sobic007G054400--Sobic001G253200 Sobic004G039200 Sobic004G039200 Sobic007G054400--Sobic004G039200 Sobic003G101500 Sobic003G101500 Sobic007G054400--Sobic003G101500 Sobic004G145500 Sobic004G145500 Sobic007G054400--Sobic004G145500 Sobic003G197800 Sobic003G197800 Sobic007G054400--Sobic003G197800 Sobic004G258700 Sobic004G258700 Sobic007G054400--Sobic004G258700 Sobic007G054400--Sobic001G433300 Sobic009G065100 Sobic009G065100 Sobic007G054400--Sobic009G065100 Sobic006G052300 Sobic006G052300 Sobic007G054400--Sobic006G052300 Sobic001G433300--Sobic007G054400 Sobic001G433300--Sobic001G253200 Sobic001G433300--Sobic003G101500 Sobic001G433300--Sobic003G438900 Sobic001G433300--Sobic005G079800 Sobic001G433300--Sobic004G039200 Sobic008G113100 Sobic008G113100 Sobic001G433300--Sobic008G113100 Sobic004G264300 Sobic004G264300 Sobic001G433300--Sobic004G264300 Sobic003G293200 Sobic003G293200 Sobic001G433300--Sobic003G293200 Sobic007G102700 Sobic007G102700 Sobic007G041300--Sobic007G102700 Sobic007G041300--Sobic001G473600 Sobic007G041300--Sobic007G191700 Sobic004G036300 Sobic004G036300 Sobic007G041300--Sobic004G036300 Sobic009G137700 Sobic009G137700 Sobic007G041300--Sobic009G137700 Sobic007G041300--Sobic003G438900 Sobic007G041300--Sobic004G088200 Sobic007G041300--Sobic005G079800 Sobic007G041300--Sobic003G427100 Sobic003G394300 Sobic003G394300 Sobic004G088200--Sobic003G394300 Sobic010G167900 Sobic010G167900 Sobic004G088200--Sobic010G167900 Sobic004G088200--Sobic005G207500 Sobic006G096900 Sobic006G096900 Sobic004G088200--Sobic006G096900 Sobic004G088200--Sobic002G153700 Sobic007G212300 Sobic007G212300 Sobic004G088200--Sobic007G212300 Sobic001G311500 Sobic001G311500 Sobic004G088200--Sobic001G311500 Sobic004G088200--Sobic003G307000 Sobic005G008800 Sobic005G008800 Sobic004G088200--Sobic005G008800 Sobic001G253200--Sobic007G054400 Sobic001G253200--Sobic005G079800 Sobic001G253200--Sobic004G039200 Sobic001G253200--Sobic001G433300 Sobic001G253200--Sobic003G101500 Sobic002G151600 Sobic002G151600 Sobic001G253200--Sobic002G151600 Sobic002G309800 Sobic002G309800 Sobic001G253200--Sobic002G309800 Sobic001G253200--Sobic003G197800 Sobic008G100100 Sobic008G100100 Sobic001G253200--Sobic008G100100
Octagon: transcription factors


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