Gene annotation
Transcriptome id Sobic.005G079800.1
Synonym SEU, Sb05g006520
Functional annotation transcriptional corepressor SEUSS, putative, expressed
UniProt A0A1B6PQW5
Pfam PF01803
Panther DB PTHR10378 PTHR10378:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003712transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT5G62090 : SEUSS-like 2
RAP-DB (Rice) LOC_Os11g10060.1 : transcriptional corepressor SEUSS, putative, expressed
MaizeGDB (Corn) Zm00025a015607 , Zm00025a029578
Brachypodium KQK06560 , KQJ89012 , KQJ89011 , PNT63961
Barley HORVU4Hr1G017160.11 , HORVU4Hr1G017160.10 , HORVU4Hr1G017160.9 , HORVU4Hr1G017160.8 , HORVU4Hr1G017160.3 , HORVU4Hr1G017160.5 , HORVU4Hr1G017160.4 , HORVU4Hr1G017160.7 , HORVU4Hr1G017160.6 , HORVU4Hr1G017140.3 , HORVU4Hr1G017140.2 , HORVU4Hr1G017140.7 , HORVU4Hr1G017140.6 , HORVU4Hr1G017140.5 , HORVU4Hr1G017140.4 , HORVU4Hr1G017140.9 , HORVU4Hr1G017140.8 , HORVU4Hr1G017140.11 , HORVU4Hr1G017140.10
Wheat TraesCS4B02G104400 , TraesCS4B02G104400 , TraesCS4A02G211800 , TraesCS4A02G211800 , TraesCS4D02G101700 , TraesCS4A02G211800 , TraesCS4D02G101700 , TraesCS4A02G211700 , TraesCS4A02G211700 , TraesCS4A02G211700 , TraesCS4D02G101500 , TraesCS4D02G101700 , TraesCS4D02G101500 , TraesCS4D02G101500 , TraesCS4B02G104300 , TraesCS4B02G104300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G438900 FYVE zinc finger domain containing protein, expressed -
2 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
3 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
4 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
5 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
6 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
7 Sobic.007G054400 FAR1 family protein, expressed -
8 Sobic.010G194700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
9 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
10 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
11 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
12 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
13 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
14 Sobic.002G151600 R-interacting factor 1, putative, expressed -
15 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
16 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
17 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
18 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
19 Sobic.007G091600 proline rich protein 3, putative, expressed -
20 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42


Gene co-expression network
sample Sobic005G079800 Sobic005G079800 Sobic003G438900 Sobic003G438900 Sobic005G079800--Sobic003G438900 Sobic001G253200 Sobic001G253200 Sobic005G079800--Sobic001G253200 Sobic007G191700 Sobic007G191700 Sobic005G079800--Sobic007G191700 Sobic002G153700 Sobic002G153700 Sobic005G079800--Sobic002G153700 Sobic005G021500 Sobic005G021500 Sobic005G079800--Sobic005G021500 Sobic003G427100 Sobic003G427100 Sobic005G079800--Sobic003G427100 Sobic007G054400 Sobic007G054400 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic004G096500 Sobic004G096500 Sobic005G079800--Sobic004G096500 Sobic003G438900--Sobic005G079800 Sobic003G438900--Sobic002G153700 Sobic003G438900--Sobic003G427100 Sobic003G438900--Sobic007G191700 Sobic003G438900--Sobic007G054400 Sobic001G433300 Sobic001G433300 Sobic003G438900--Sobic001G433300 Sobic007G041300 Sobic007G041300 Sobic003G438900--Sobic007G041300 Sobic004G088200 Sobic004G088200 Sobic003G438900--Sobic004G088200 Sobic003G438900--Sobic001G253200 Sobic001G253200--Sobic007G054400 Sobic001G253200--Sobic005G079800 Sobic004G039200 Sobic004G039200 Sobic001G253200--Sobic004G039200 Sobic001G253200--Sobic001G433300 Sobic003G101500 Sobic003G101500 Sobic001G253200--Sobic003G101500 Sobic002G151600 Sobic002G151600 Sobic001G253200--Sobic002G151600 Sobic002G309800 Sobic002G309800 Sobic001G253200--Sobic002G309800 Sobic003G197800 Sobic003G197800 Sobic001G253200--Sobic003G197800 Sobic008G100100 Sobic008G100100 Sobic001G253200--Sobic008G100100 Sobic010G237900 Sobic010G237900 Sobic007G191700--Sobic010G237900 Sobic007G091600 Sobic007G091600 Sobic007G191700--Sobic007G091600 Sobic004G129300 Sobic004G129300 Sobic007G191700--Sobic004G129300 Sobic001G395100 Sobic001G395100 Sobic007G191700--Sobic001G395100 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic007G191700--Sobic006G118700 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600 Sobic002G071500 Sobic002G071500 Sobic002G153700--Sobic002G071500 Sobic005G207500 Sobic005G207500 Sobic002G153700--Sobic005G207500 Sobic008G009700 Sobic008G009700 Sobic002G153700--Sobic008G009700 Sobic010G065300 Sobic010G065300 Sobic002G153700--Sobic010G065300 Sobic009G119000 Sobic009G119000 Sobic002G153700--Sobic009G119000 Sobic003G307000 Sobic003G307000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic002G153700--Sobic010G069100 Sobic001G306900 Sobic001G306900 Sobic002G153700--Sobic001G306900 Sobic002G320500 Sobic002G320500 Sobic005G021500--Sobic002G320500 Sobic009G065100 Sobic009G065100 Sobic005G021500--Sobic009G065100 Sobic003G394300 Sobic003G394300 Sobic005G021500--Sobic003G394300 Sobic001G533700 Sobic001G533700 Sobic005G021500--Sobic001G533700 Sobic004G158200 Sobic004G158200 Sobic005G021500--Sobic004G158200 Sobic005G021500--Sobic004G039200 Sobic009G000500 Sobic009G000500 Sobic005G021500--Sobic009G000500 Sobic006G133800 Sobic006G133800 Sobic005G021500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic005G021500--Sobic001G090400 Sobic003G427100--Sobic005G079800 Sobic007G044100 Sobic007G044100 Sobic003G427100--Sobic007G044100 Sobic003G409200 Sobic003G409200 Sobic003G427100--Sobic003G409200 Sobic004G285000 Sobic004G285000 Sobic003G427100--Sobic004G285000 Sobic001G398800 Sobic001G398800 Sobic003G427100--Sobic001G398800 Sobic003G427100--Sobic002G153700 Sobic004G156500 Sobic004G156500 Sobic003G427100--Sobic004G156500 Sobic003G427100--Sobic003G438900 Sobic003G427100--Sobic003G307000 Sobic007G054400--Sobic001G253200 Sobic007G054400--Sobic004G039200 Sobic007G054400--Sobic003G101500 Sobic004G145500 Sobic004G145500 Sobic007G054400--Sobic004G145500 Sobic007G054400--Sobic003G197800 Sobic004G258700 Sobic004G258700 Sobic007G054400--Sobic004G258700 Sobic007G054400--Sobic001G433300 Sobic007G054400--Sobic009G065100 Sobic006G052300 Sobic006G052300 Sobic007G054400--Sobic006G052300 Sobic002G067800 Sobic002G067800 Sobic010G194700--Sobic002G067800 Sobic001G206100 Sobic001G206100 Sobic010G194700--Sobic001G206100 Sobic008G165100 Sobic008G165100 Sobic010G194700--Sobic008G165100 Sobic010G194700--Sobic002G151600 Sobic004G213000 Sobic004G213000 Sobic010G194700--Sobic004G213000 Sobic005G059100 Sobic005G059100 Sobic010G194700--Sobic005G059100 Sobic006G013500 Sobic006G013500 Sobic010G194700--Sobic006G013500 Sobic010G194700--Sobic005G079800 Sobic010G194700--Sobic003G197800 Sobic007G011600 Sobic007G011600 Sobic004G096500--Sobic007G011600 Sobic001G303675 Sobic001G303675 Sobic004G096500--Sobic001G303675 Sobic006G222300 Sobic006G222300 Sobic004G096500--Sobic006G222300 Sobic004G096500--Sobic006G052300 Sobic008G011100 Sobic008G011100 Sobic004G096500--Sobic008G011100 Sobic002G259800 Sobic002G259800 Sobic004G096500--Sobic002G259800 Sobic004G096500--Sobic001G306900 Sobic004G096500--Sobic005G079800 Sobic001G261496 Sobic001G261496 Sobic004G096500--Sobic001G261496
Octagon: transcription factors


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