Gene annotation
Transcriptome id Sobic.002G151600.6,Sobic.002G151600.4,Sobic.002G151600.5,Sobic.002G151600.3
Synonym Sb02g018570
Functional annotation R-interacting factor 1, putative, expressed
UniProt A0A1B6QBI6 , C5X851
Pfam PF09465 PF03735
Panther DB PTHR33432 PTHR33432:SF2
NCBI CDD KOG4675; Uncharacterized conserved protein, contains ENT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G13020 : Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
RAP-DB (Rice) LOC_Os08g23930.2,LOC_Os08g23930.1 : ENT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046228 , Zm00025a013237
Brachypodium KQJ96330
Barley HORVU5Hr1G053150.9 , HORVU5Hr1G053150.1 , HORVU5Hr1G053150.3 , HORVU5Hr1G053150.2 , HORVU5Hr1G053150.5 , HORVU5Hr1G053150.4 , HORVU5Hr1G053150.6 , HORVU5Hr1G053150.14 , HORVU5Hr1G053150.11 , HORVU5Hr1G053150.10 , HORVU5Hr1G053150.13 , HORVU5Hr1G053150.12 , HORVU5Hr1G053150.7 , HORVU5Hr1G053150.8
Wheat TraesCS5A02G173100 , TraesCS5A02G173100 , TraesCS5A02G173100 , TraesCS5D02G177600 , TraesCS5D02G177600 , TraesCS5B02G170500 , TraesCS5B02G170500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G151600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
2 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
3 Sobic.002G320500 MYB family transcription factor, putative, expressed -
4 Sobic.002G313300 bromodomain domain containing protein, expressed -
5 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
6 Sobic.001G094000 expressed protein -
7 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
8 Sobic.002G248400 ENT domain containing protein, expressed -
9 Sobic.001G303675 - -
10 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
11 Sobic.004G213000 AT hook motif family protein, expressed -
12 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
13 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.006G032400 expressed protein -
15 Sobic.005G015900 dnaJ domain containing protein, expressed -
16 Sobic.001G477800 expressed protein -
17 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
18 Sobic.006G080300 SET domain containing protein, expressed -
19 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
20 Sobic.001G206100 expressed protein -


Gene co-expression network
sample Sobic002G151600 Sobic002G151600 Sobic002G157000 Sobic002G157000 Sobic002G151600--Sobic002G157000 Sobic003G197800 Sobic003G197800 Sobic002G151600--Sobic003G197800 Sobic002G320500 Sobic002G320500 Sobic002G151600--Sobic002G320500 Sobic002G313300 Sobic002G313300 Sobic002G151600--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic002G151600--Sobic009G000500 Sobic001G094000 Sobic001G094000 Sobic002G151600--Sobic001G094000 Sobic009G065100 Sobic009G065100 Sobic002G151600--Sobic009G065100 Sobic002G248400 Sobic002G248400 Sobic002G151600--Sobic002G248400 Sobic001G303675 Sobic001G303675 Sobic002G151600--Sobic001G303675 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic001G420200 Sobic001G420200 Sobic002G157000--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic002G157000--Sobic008G173900 Sobic003G268300 Sobic003G268300 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic003G197800--Sobic002G157000 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic003G197800--Sobic002G151600 Sobic006G133800 Sobic006G133800 Sobic003G197800--Sobic006G133800 Sobic003G197800--Sobic009G065100 Sobic003G173950 Sobic003G173950 Sobic003G197800--Sobic003G173950 Sobic003G197800--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic003G197800--Sobic001G206100 Sobic002G320500--Sobic002G157000 Sobic002G320500--Sobic002G248400 Sobic002G320500--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic002G320500--Sobic009G210500 Sobic002G320500--Sobic006G133800 Sobic001G107500 Sobic001G107500 Sobic002G320500--Sobic001G107500 Sobic006G032400 Sobic006G032400 Sobic002G320500--Sobic006G032400 Sobic002G320500--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic002G320500--Sobic001G090400 Sobic001G477800 Sobic001G477800 Sobic002G313300--Sobic001G477800 Sobic002G077200 Sobic002G077200 Sobic002G313300--Sobic002G077200 Sobic007G011400 Sobic007G011400 Sobic002G313300--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic002G313300--Sobic010G263800 Sobic001G543900 Sobic001G543900 Sobic002G313300--Sobic001G543900 Sobic006G080300 Sobic006G080300 Sobic002G313300--Sobic006G080300 Sobic006G009400 Sobic006G009400 Sobic002G313300--Sobic006G009400 Sobic007G185900 Sobic007G185900 Sobic002G313300--Sobic007G185900 Sobic004G031700 Sobic004G031700 Sobic002G313300--Sobic004G031700 Sobic009G000500--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic009G000500--Sobic003G445400 Sobic009G000500--Sobic002G320500 Sobic006G128900 Sobic006G128900 Sobic009G000500--Sobic006G128900 Sobic009G000500--Sobic006G133800 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic009G000500--Sobic008G173900 Sobic009G000500--Sobic001G206100 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic001G094000--Sobic004G031700 Sobic001G094000--Sobic006G080300 Sobic009G065100--Sobic002G320500 Sobic009G065100--Sobic002G157000 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic009G065100--Sobic004G084300 Sobic002G144933 Sobic002G144933 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic009G065100--Sobic001G107500 Sobic009G065100--Sobic003G197800 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic001G306900 Sobic001G306900 Sobic001G303675--Sobic001G306900 Sobic001G303675--Sobic001G094000 Sobic001G303675--Sobic002G144933 Sobic009G100050 Sobic009G100050 Sobic001G303675--Sobic009G100050 Sobic005G015900 Sobic005G015900 Sobic001G303675--Sobic005G015900 Sobic001G303675--Sobic002G320500 Sobic004G096500 Sobic004G096500 Sobic001G303675--Sobic004G096500 Sobic001G303675--Sobic002G151600 Sobic003G170100 Sobic003G170100 Sobic001G303675--Sobic003G170100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.