Gene annotation
Transcriptome id Sobic.004G213000.1
Synonym Sb04g025840
Functional annotation AT hook motif family protein, expressed
UniProt C5XXC4
Pfam -
Panther DB PTHR12663 PTHR12663:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47690 : binding
RAP-DB (Rice) LOC_Os02g39920.1 : AT hook motif family protein, expressed
MaizeGDB (Corn) Zm00025a021184 , Zm00025a031942 , Zm00025a024416 , Zm00025a013295
Brachypodium -
Barley -
Wheat TraesCS6B02G249900 , TraesCS6D02G203700 , TraesCS6D02G203700 , TraesCS6D02G203700
Populus -


JBrowse

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cDNA sequences
Sobic.004G213000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G271000 expressed protein -
2 Sobic.001G206100 expressed protein -
3 Sobic.006G032400 expressed protein -
4 Sobic.006G080300 SET domain containing protein, expressed -
5 Sobic.002G248400 ENT domain containing protein, expressed -
6 Sobic.003G108700 RNA recognition motif, putative, expressed -
7 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
8 Sobic.002G151600 R-interacting factor 1, putative, expressed -
9 Sobic.001G257300 OsFBL52 - F-box domain and LRR containing protein, expressed -
10 Sobic.001G094000 expressed protein -
11 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
12 Sobic.010G194700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
13 Sobic.003G268300 surp module family protein, putative, expressed -
14 Sobic.003G173950 - -
15 Sobic.002G320500 MYB family transcription factor, putative, expressed -
16 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
17 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
18 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
20 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10


Gene co-expression network
sample Sobic004G213000 Sobic004G213000 Sobic004G271000 Sobic004G271000 Sobic004G213000--Sobic004G271000 Sobic001G206100 Sobic001G206100 Sobic004G213000--Sobic001G206100 Sobic006G032400 Sobic006G032400 Sobic004G213000--Sobic006G032400 Sobic006G080300 Sobic006G080300 Sobic004G213000--Sobic006G080300 Sobic002G248400 Sobic002G248400 Sobic004G213000--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G213000--Sobic003G108700 Sobic002G157000 Sobic002G157000 Sobic004G213000--Sobic002G157000 Sobic002G151600 Sobic002G151600 Sobic004G213000--Sobic002G151600 Sobic001G257300 Sobic001G257300 Sobic004G213000--Sobic001G257300 Sobic004G271000--Sobic004G213000 Sobic010G201500 Sobic010G201500 Sobic004G271000--Sobic010G201500 Sobic004G271000--Sobic006G032400 Sobic010G069100 Sobic010G069100 Sobic004G271000--Sobic010G069100 Sobic004G271000--Sobic002G248400 Sobic004G271000--Sobic001G206100 Sobic007G000100 Sobic007G000100 Sobic004G271000--Sobic007G000100 Sobic008G067600 Sobic008G067600 Sobic004G271000--Sobic008G067600 Sobic003G397800 Sobic003G397800 Sobic004G271000--Sobic003G397800 Sobic001G206100--Sobic001G257300 Sobic006G013500 Sobic006G013500 Sobic001G206100--Sobic006G013500 Sobic002G320500 Sobic002G320500 Sobic001G206100--Sobic002G320500 Sobic001G206100--Sobic006G080300 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic002G161000 Sobic002G161000 Sobic001G206100--Sobic002G161000 Sobic006G032400--Sobic002G320500 Sobic006G032400--Sobic002G248400 Sobic005G015900 Sobic005G015900 Sobic006G032400--Sobic005G015900 Sobic003G241200 Sobic003G241200 Sobic006G032400--Sobic003G241200 Sobic009G210500 Sobic009G210500 Sobic006G032400--Sobic009G210500 Sobic001G090400 Sobic001G090400 Sobic006G032400--Sobic001G090400 Sobic006G173100 Sobic006G173100 Sobic006G032400--Sobic006G173100 Sobic006G032400--Sobic004G271000 Sobic001G094000 Sobic001G094000 Sobic006G032400--Sobic001G094000 Sobic003G268300 Sobic003G268300 Sobic006G080300--Sobic003G268300 Sobic004G031700 Sobic004G031700 Sobic006G080300--Sobic004G031700 Sobic006G080300--Sobic001G094000 Sobic001G477800 Sobic001G477800 Sobic006G080300--Sobic001G477800 Sobic002G313300 Sobic002G313300 Sobic006G080300--Sobic002G313300 Sobic006G080300--Sobic001G206100 Sobic006G080300--Sobic002G157000 Sobic003G170100 Sobic003G170100 Sobic006G080300--Sobic003G170100 Sobic006G080300--Sobic001G257300 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G248400--Sobic003G200200 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic003G108700--Sobic002G248400 Sobic003G108700--Sobic002G157000 Sobic003G108700--Sobic003G268300 Sobic003G108700--Sobic004G257400 Sobic007G126600 Sobic007G126600 Sobic003G108700--Sobic007G126600 Sobic003G108700--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic003G108700--Sobic008G173900 Sobic003G108700--Sobic003G200200 Sobic007G167500 Sobic007G167500 Sobic003G108700--Sobic007G167500 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic002G151600--Sobic002G157000 Sobic003G197800 Sobic003G197800 Sobic002G151600--Sobic003G197800 Sobic002G151600--Sobic002G320500 Sobic002G151600--Sobic002G313300 Sobic002G151600--Sobic009G000500 Sobic002G151600--Sobic001G094000 Sobic009G065100 Sobic009G065100 Sobic002G151600--Sobic009G065100 Sobic002G151600--Sobic002G248400 Sobic001G303675 Sobic001G303675 Sobic002G151600--Sobic001G303675 Sobic001G257300--Sobic001G206100 Sobic001G257300--Sobic006G013500 Sobic001G257300--Sobic003G170100 Sobic001G257300--Sobic006G080300 Sobic001G257300--Sobic003G200200 Sobic002G001600 Sobic002G001600 Sobic001G257300--Sobic002G001600 Sobic001G257300--Sobic004G213000 Sobic001G257300--Sobic002G161000 Sobic001G257300--Sobic001G162300
Octagon: transcription factors


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