Gene annotation
Transcriptome id Sobic.001G257300.1
Synonym SLOMO
Functional annotation OsFBL52 - F-box domain and LRR containing protein, expressed
UniProt A0A1Z5S7E0
Pfam PF12937
Panther DB PTHR24006 PTHR24006:SF502
NCBI CDD KOG4341; F-box protein containing LRR
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G33210 : F-box family protein
RAP-DB (Rice) LOC_Os10g25680.1 : OsFBL52 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a007040 , Zm00025a017843
Brachypodium KQJ96636 , KQJ96627
Barley -
Wheat TraesCS1A02G136200 , TraesCS1B02G154100 , TraesCS1B02G154100 , TraesCS1B02G154100
Populus -


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cDNA sequences
Sobic.001G257300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G206100 expressed protein -
2 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
3 Sobic.003G170100 - -
4 Sobic.006G080300 SET domain containing protein, expressed -
5 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
6 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.004G213000 AT hook motif family protein, expressed -
8 Sobic.002G161000 RNA recognition motif containing protein, expressed -
9 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
10 Sobic.006G252000 - -
11 Sobic.002G320500 MYB family transcription factor, putative, expressed -
12 Sobic.001G356500 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
13 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
14 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
15 Sobic.001G094000 expressed protein -
16 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
17 Sobic.001G477800 expressed protein -
18 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
19 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
20 Sobic.003G173950 - -


Gene co-expression network
sample Sobic001G257300 Sobic001G257300 Sobic001G206100 Sobic001G206100 Sobic001G257300--Sobic001G206100 Sobic006G013500 Sobic006G013500 Sobic001G257300--Sobic006G013500 Sobic003G170100 Sobic003G170100 Sobic001G257300--Sobic003G170100 Sobic006G080300 Sobic006G080300 Sobic001G257300--Sobic006G080300 Sobic003G200200 Sobic003G200200 Sobic001G257300--Sobic003G200200 Sobic002G001600 Sobic002G001600 Sobic001G257300--Sobic002G001600 Sobic004G213000 Sobic004G213000 Sobic001G257300--Sobic004G213000 Sobic002G161000 Sobic002G161000 Sobic001G257300--Sobic002G161000 Sobic001G162300 Sobic001G162300 Sobic001G257300--Sobic001G162300 Sobic001G206100--Sobic001G257300 Sobic001G206100--Sobic006G013500 Sobic002G320500 Sobic002G320500 Sobic001G206100--Sobic002G320500 Sobic001G206100--Sobic006G080300 Sobic002G157000 Sobic002G157000 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic001G206100--Sobic002G161000 Sobic006G013500--Sobic001G206100 Sobic006G013500--Sobic001G257300 Sobic001G306900 Sobic001G306900 Sobic006G013500--Sobic001G306900 Sobic006G013500--Sobic006G080300 Sobic004G031700 Sobic004G031700 Sobic006G013500--Sobic004G031700 Sobic006G013500--Sobic009G000500 Sobic003G197800 Sobic003G197800 Sobic006G013500--Sobic003G197800 Sobic001G094000 Sobic001G094000 Sobic006G013500--Sobic001G094000 Sobic006G046700 Sobic006G046700 Sobic006G013500--Sobic006G046700 Sobic005G110472 Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G268300 Sobic003G268300 Sobic003G170100--Sobic003G268300 Sobic003G170100--Sobic003G200200 Sobic007G096600 Sobic007G096600 Sobic003G170100--Sobic007G096600 Sobic002G144933 Sobic002G144933 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic007G137900 Sobic007G137900 Sobic003G170100--Sobic007G137900 Sobic003G170100--Sobic001G162300 Sobic006G080300--Sobic003G268300 Sobic006G080300--Sobic004G031700 Sobic006G080300--Sobic001G094000 Sobic001G477800 Sobic001G477800 Sobic006G080300--Sobic001G477800 Sobic002G313300 Sobic002G313300 Sobic006G080300--Sobic002G313300 Sobic006G080300--Sobic001G206100 Sobic006G080300--Sobic002G157000 Sobic006G080300--Sobic003G170100 Sobic006G080300--Sobic001G257300 Sobic003G200200--Sobic002G157000 Sobic002G006900 Sobic002G006900 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic003G200200--Sobic007G096600 Sobic002G248400 Sobic002G248400 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic008G173900 Sobic008G173900 Sobic003G200200--Sobic008G173900 Sobic003G200200--Sobic003G170100 Sobic008G116500 Sobic008G116500 Sobic002G001600--Sobic008G116500 Sobic001G543900 Sobic001G543900 Sobic002G001600--Sobic001G543900 Sobic002G001600--Sobic002G313300 Sobic008G101800 Sobic008G101800 Sobic002G001600--Sobic008G101800 Sobic007G185900 Sobic007G185900 Sobic002G001600--Sobic007G185900 Sobic002G166700 Sobic002G166700 Sobic002G001600--Sobic002G166700 Sobic008G106000 Sobic008G106000 Sobic002G001600--Sobic008G106000 Sobic007G037100 Sobic007G037100 Sobic002G001600--Sobic007G037100 Sobic002G166600 Sobic002G166600 Sobic002G001600--Sobic002G166600 Sobic004G271000 Sobic004G271000 Sobic004G213000--Sobic004G271000 Sobic004G213000--Sobic001G206100 Sobic006G032400 Sobic006G032400 Sobic004G213000--Sobic006G032400 Sobic004G213000--Sobic006G080300 Sobic004G213000--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G213000--Sobic003G108700 Sobic004G213000--Sobic002G157000 Sobic002G151600 Sobic002G151600 Sobic004G213000--Sobic002G151600 Sobic004G213000--Sobic001G257300 Sobic002G161000--Sobic001G206100 Sobic002G161000--Sobic007G137900 Sobic002G161000--Sobic003G200200 Sobic002G161000--Sobic001G094000 Sobic002G161000--Sobic001G257300 Sobic002G161000--Sobic003G170100 Sobic002G161000--Sobic001G306900 Sobic002G161000--Sobic006G046700 Sobic002G161000--Sobic001G251700 Sobic001G162300--Sobic002G157000 Sobic006G246900 Sobic006G246900 Sobic001G162300--Sobic006G246900 Sobic001G162300--Sobic003G268300 Sobic007G178700 Sobic007G178700 Sobic001G162300--Sobic007G178700 Sobic006G082600 Sobic006G082600 Sobic001G162300--Sobic006G082600 Sobic007G011400 Sobic007G011400 Sobic001G162300--Sobic007G011400 Sobic001G162300--Sobic001G094000 Sobic001G162300--Sobic003G170100 Sobic001G162300--Sobic001G477800
Octagon: transcription factors


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