Gene annotation
Transcriptome id Sobic.001G356500.1
Synonym ATPTB1, Sb01g034060, PTB, PTB1
Functional annotation polypyrimidine tract-binding protein, putative, expressed
UniProt A0A1B6QMY0
Pfam PF13893 PF00076
Panther DB PTHR24012 PTHR24012:SF386
NCBI CDD KOG1190; Polypyrimidine tract-binding protein
KEGG Orthology K14948; PTBP2, polypyrimidine tract-binding protein 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G01150 : polypyrimidine tract-binding protein 1
RAP-DB (Rice) LOC_Os03g25980.2 : polypyrimidine tract-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a002660 , Zm00025a052063 , Zm00025a031142
Brachypodium KQJ98409 , KQK21505
Barley HORVU7Hr1G063630.3 , HORVU7Hr1G063630.4 , HORVU4Hr1G039070.11 , HORVU4Hr1G039070.10 , HORVU4Hr1G039070.9 , HORVU4Hr1G039070.8 , HORVU4Hr1G039070.3 , HORVU4Hr1G039070.2 , HORVU4Hr1G039070.1 , HORVU4Hr1G039070.7 , HORVU4Hr1G039070.6 , HORVU4Hr1G039070.5 , HORVU4Hr1G039070.4
Wheat TraesCS4B02G153900 , TraesCS4B02G153900 , TraesCS4B02G153900 , TraesCS4B02G153900 , TraesCS4D02G163000 , TraesCS7A02G285500 , TraesCS7A02G285500 , TraesCS7D02G282900 , TraesCS7D02G282900 , TraesCS7D02G282900 , TraesCS7B02G200000 , TraesCS4A02G147800
Populus PNS99980 , PNS99979 , PNS99978 , PNS99977


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G173950 - -
2 Sobic.001G206100 expressed protein -
3 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
4 Sobic.002G264200 RNA recognition motif containing protein, expressed -
5 Sobic.002G320500 MYB family transcription factor, putative, expressed -
6 Sobic.003G170100 - -
7 Sobic.002G121600 myb-like DNA-binding domain containing protein, expressed -
8 Sobic.001G257300 OsFBL52 - F-box domain and LRR containing protein, expressed -
9 Sobic.002G161000 RNA recognition motif containing protein, expressed -
10 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
11 Sobic.009G102500 - -
12 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
13 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
14 Sobic.008G113100 protein binding protein, putative, expressed -
15 Sobic.001G228701 - -
16 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
17 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
18 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
19 Sobic.002G248400 ENT domain containing protein, expressed -
20 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein


Gene co-expression network
sample Sobic001G356500 Sobic001G356500 Sobic003G173950 Sobic003G173950 Sobic001G356500--Sobic003G173950 Sobic001G206100 Sobic001G206100 Sobic001G356500--Sobic001G206100 Sobic007G065400 Sobic007G065400 Sobic001G356500--Sobic007G065400 Sobic002G264200 Sobic002G264200 Sobic001G356500--Sobic002G264200 Sobic002G320500 Sobic002G320500 Sobic001G356500--Sobic002G320500 Sobic003G170100 Sobic003G170100 Sobic001G356500--Sobic003G170100 Sobic002G121600 Sobic002G121600 Sobic001G356500--Sobic002G121600 Sobic001G257300 Sobic001G257300 Sobic001G356500--Sobic001G257300 Sobic002G161000 Sobic002G161000 Sobic001G356500--Sobic002G161000 Sobic003G173950--Sobic001G356500 Sobic003G241200 Sobic003G241200 Sobic003G173950--Sobic003G241200 Sobic003G197800 Sobic003G197800 Sobic003G173950--Sobic003G197800 Sobic003G173950--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic003G173950--Sobic002G157000 Sobic003G173950--Sobic007G065400 Sobic004G084300 Sobic004G084300 Sobic003G173950--Sobic004G084300 Sobic009G102500 Sobic009G102500 Sobic003G173950--Sobic009G102500 Sobic003G173950--Sobic001G206100 Sobic001G206100--Sobic001G257300 Sobic006G013500 Sobic006G013500 Sobic001G206100--Sobic006G013500 Sobic001G206100--Sobic002G320500 Sobic006G080300 Sobic006G080300 Sobic001G206100--Sobic006G080300 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic004G213000 Sobic004G213000 Sobic001G206100--Sobic004G213000 Sobic001G206100--Sobic001G356500 Sobic001G206100--Sobic002G161000 Sobic002G006900 Sobic002G006900 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic009G040600 Sobic009G040600 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic010G069100 Sobic010G069100 Sobic002G264200--Sobic010G069100 Sobic003G416700 Sobic003G416700 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic008G153000 Sobic008G153000 Sobic002G264200--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G264200--Sobic010G236400 Sobic002G071500 Sobic002G071500 Sobic002G264200--Sobic002G071500 Sobic002G264200--Sobic007G065400 Sobic002G153700 Sobic002G153700 Sobic002G264200--Sobic002G153700 Sobic006G118700 Sobic006G118700 Sobic002G264200--Sobic006G118700 Sobic002G320500--Sobic002G157000 Sobic002G248400 Sobic002G248400 Sobic002G320500--Sobic002G248400 Sobic009G065100 Sobic009G065100 Sobic002G320500--Sobic009G065100 Sobic002G320500--Sobic009G210500 Sobic006G133800 Sobic006G133800 Sobic002G320500--Sobic006G133800 Sobic001G107500 Sobic001G107500 Sobic002G320500--Sobic001G107500 Sobic006G032400 Sobic006G032400 Sobic002G320500--Sobic006G032400 Sobic002G320500--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic002G320500--Sobic001G090400 Sobic005G110472 Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G268300 Sobic003G268300 Sobic003G170100--Sobic003G268300 Sobic003G200200 Sobic003G200200 Sobic003G170100--Sobic003G200200 Sobic007G096600 Sobic007G096600 Sobic003G170100--Sobic007G096600 Sobic002G144933 Sobic002G144933 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic007G137900 Sobic007G137900 Sobic003G170100--Sobic007G137900 Sobic001G162300 Sobic001G162300 Sobic003G170100--Sobic001G162300 Sobic002G121600--Sobic001G356500 Sobic009G191100 Sobic009G191100 Sobic002G121600--Sobic009G191100 Sobic002G133400 Sobic002G133400 Sobic002G121600--Sobic002G133400 Sobic003G148000 Sobic003G148000 Sobic002G121600--Sobic003G148000 Sobic002G343901 Sobic002G343901 Sobic002G121600--Sobic002G343901 Sobic001G456900 Sobic001G456900 Sobic002G121600--Sobic001G456900 Sobic003G332800 Sobic003G332800 Sobic002G121600--Sobic003G332800 Sobic002G121600--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic002G121600--Sobic008G113100 Sobic001G257300--Sobic001G206100 Sobic001G257300--Sobic006G013500 Sobic001G257300--Sobic003G170100 Sobic001G257300--Sobic006G080300 Sobic001G257300--Sobic003G200200 Sobic002G001600 Sobic002G001600 Sobic001G257300--Sobic002G001600 Sobic001G257300--Sobic004G213000 Sobic001G257300--Sobic002G161000 Sobic001G257300--Sobic001G162300 Sobic002G161000--Sobic001G206100 Sobic002G161000--Sobic007G137900 Sobic002G161000--Sobic003G200200 Sobic001G094000 Sobic001G094000 Sobic002G161000--Sobic001G094000 Sobic002G161000--Sobic001G257300 Sobic002G161000--Sobic003G170100 Sobic001G306900 Sobic001G306900 Sobic002G161000--Sobic001G306900 Sobic006G046700 Sobic006G046700 Sobic002G161000--Sobic006G046700 Sobic001G251700 Sobic001G251700 Sobic002G161000--Sobic001G251700
Octagon: transcription factors


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