Gene annotation
Transcriptome id Sobic.002G161000.11,Sobic.002G161000.14,Sobic.002G161000.7,Sobic.002G161000.6,Sobic.002G161000.13,Sobic.002G161000.1,Sobic.002G161000.15,Sobic.002G161000.2,Sobic.002G161000.12,Sobic.002G161000.3,Sobic.002G161000.4,Sobic.002G161000.8,Sobic.002G161000.9,Sobic.002G161000.10,Sobic.002G161000.5
Synonym Sb02g020460
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A1W0W481 , A0A1W0W4B0 , A0A1W0W4F5 , A0A1W0W4E5
Pfam PF07744 PF00076
Panther DB PTHR23189 PTHR23189:SF41
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G12640 : RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os09g12730.1,LOC_Os09g12730.2 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a046362
Brachypodium KQJ89763
Barley -
Wheat TraesCS5D02G182900 , TraesCS5A02G178400 , TraesCS5B02G176100 , TraesCS5B02G176100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G206100 expressed protein -
2 Sobic.007G137900 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
3 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
4 Sobic.001G094000 expressed protein -
5 Sobic.001G257300 OsFBL52 - F-box domain and LRR containing protein, expressed -
6 Sobic.003G170100 - -
7 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
8 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
9 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
10 Sobic.001G356500 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
11 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
12 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
13 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
14 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
15 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
16 Sobic.006G080300 SET domain containing protein, expressed -
17 Sobic.002G264200 RNA recognition motif containing protein, expressed -
18 Sobic.002G248400 ENT domain containing protein, expressed -
19 Sobic.004G196700 expressed protein -
20 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2


Gene co-expression network
sample Sobic002G161000 Sobic002G161000 Sobic001G206100 Sobic001G206100 Sobic002G161000--Sobic001G206100 Sobic007G137900 Sobic007G137900 Sobic002G161000--Sobic007G137900 Sobic003G200200 Sobic003G200200 Sobic002G161000--Sobic003G200200 Sobic001G094000 Sobic001G094000 Sobic002G161000--Sobic001G094000 Sobic001G257300 Sobic001G257300 Sobic002G161000--Sobic001G257300 Sobic003G170100 Sobic003G170100 Sobic002G161000--Sobic003G170100 Sobic001G306900 Sobic001G306900 Sobic002G161000--Sobic001G306900 Sobic006G046700 Sobic006G046700 Sobic002G161000--Sobic006G046700 Sobic001G251700 Sobic001G251700 Sobic002G161000--Sobic001G251700 Sobic001G206100--Sobic001G257300 Sobic006G013500 Sobic006G013500 Sobic001G206100--Sobic006G013500 Sobic002G320500 Sobic002G320500 Sobic001G206100--Sobic002G320500 Sobic006G080300 Sobic006G080300 Sobic001G206100--Sobic006G080300 Sobic002G157000 Sobic002G157000 Sobic001G206100--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic001G206100--Sobic009G000500 Sobic004G213000 Sobic004G213000 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic001G206100--Sobic002G161000 Sobic007G137900--Sobic001G251700 Sobic002G157300 Sobic002G157300 Sobic007G137900--Sobic002G157300 Sobic004G196700 Sobic004G196700 Sobic007G137900--Sobic004G196700 Sobic007G137900--Sobic003G200200 Sobic007G137900--Sobic003G170100 Sobic004G349900 Sobic004G349900 Sobic007G137900--Sobic004G349900 Sobic005G149500 Sobic005G149500 Sobic007G137900--Sobic005G149500 Sobic007G011400 Sobic007G011400 Sobic007G137900--Sobic007G011400 Sobic007G137900--Sobic002G157000 Sobic003G200200--Sobic002G157000 Sobic002G006900 Sobic002G006900 Sobic003G200200--Sobic002G006900 Sobic003G268300 Sobic003G268300 Sobic003G200200--Sobic003G268300 Sobic003G200200--Sobic001G251700 Sobic007G096600 Sobic007G096600 Sobic003G200200--Sobic007G096600 Sobic002G248400 Sobic002G248400 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic008G173900 Sobic008G173900 Sobic003G200200--Sobic008G173900 Sobic003G200200--Sobic003G170100 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G477800 Sobic001G477800 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic001G094000--Sobic006G080300 Sobic001G257300--Sobic001G206100 Sobic001G257300--Sobic006G013500 Sobic001G257300--Sobic003G170100 Sobic001G257300--Sobic006G080300 Sobic001G257300--Sobic003G200200 Sobic002G001600 Sobic002G001600 Sobic001G257300--Sobic002G001600 Sobic001G257300--Sobic004G213000 Sobic001G257300--Sobic002G161000 Sobic001G162300 Sobic001G162300 Sobic001G257300--Sobic001G162300 Sobic005G110472 Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G170100--Sobic003G268300 Sobic003G170100--Sobic003G200200 Sobic003G170100--Sobic007G096600 Sobic002G144933 Sobic002G144933 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic003G170100--Sobic007G137900 Sobic003G170100--Sobic001G162300 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic010G065300 Sobic010G065300 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic007G065400 Sobic007G065400 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic002G153700 Sobic002G153700 Sobic001G306900--Sobic002G153700 Sobic001G306900--Sobic006G013500 Sobic001G306900--Sobic001G094000 Sobic008G153000 Sobic008G153000 Sobic006G046700--Sobic008G153000 Sobic006G046700--Sobic004G031700 Sobic007G026000 Sobic007G026000 Sobic006G046700--Sobic007G026000 Sobic006G046700--Sobic001G206100 Sobic006G046700--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic006G046700--Sobic003G445400 Sobic001G425000 Sobic001G425000 Sobic006G046700--Sobic001G425000 Sobic001G405300 Sobic001G405300 Sobic006G046700--Sobic001G405300 Sobic006G046700--Sobic006G013500 Sobic001G251700--Sobic007G137900 Sobic001G251700--Sobic003G200200 Sobic001G251700--Sobic002G157300 Sobic001G251700--Sobic002G157000 Sobic006G082600 Sobic006G082600 Sobic001G251700--Sobic006G082600 Sobic001G251700--Sobic002G248400 Sobic001G251700--Sobic002G320500 Sobic001G251700--Sobic003G268300 Sobic003G220200 Sobic003G220200 Sobic001G251700--Sobic003G220200
Octagon: transcription factors


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