Gene annotation
Transcriptome id Sobic.006G013500.1
Synonym Sb06g001320
Functional annotation hydrolase/ zinc ion binding protein, putative, expressed
UniProt C5YC40
Pfam PF00383
Panther DB PTHR11079 PTHR11079:SF96
NCBI CDD KOG2771; Subunit of tRNA-specific adenosine-34 deaminase
KEGG Orthology K15442; TAD3, tRNA-specific adenosine deaminase 3
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G24670 : Cytidine/deoxycytidylate deaminase family protein
RAP-DB (Rice) LOC_Os09g04210.2 : hydrolase/ zinc ion binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a012276 , Zm00025a055577
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G013500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G206100 expressed protein -
2 Sobic.001G257300 OsFBL52 - F-box domain and LRR containing protein, expressed -
3 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
4 Sobic.006G080300 SET domain containing protein, expressed -
5 Sobic.004G031700 expressed protein -
6 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
7 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
8 Sobic.001G094000 expressed protein -
9 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
10 Sobic.006G123900 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
11 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
12 Sobic.002G151600 R-interacting factor 1, putative, expressed -
13 Sobic.007G026000 ATBET9, putative, expressed -
14 Sobic.001G303675 - -
15 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
16 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
17 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
18 Sobic.005G015900 dnaJ domain containing protein, expressed -
19 Sobic.004G213000 AT hook motif family protein, expressed -
20 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4


Gene co-expression network
sample Sobic006G013500 Sobic006G013500 Sobic001G206100 Sobic001G206100 Sobic006G013500--Sobic001G206100 Sobic001G257300 Sobic001G257300 Sobic006G013500--Sobic001G257300 Sobic001G306900 Sobic001G306900 Sobic006G013500--Sobic001G306900 Sobic006G080300 Sobic006G080300 Sobic006G013500--Sobic006G080300 Sobic004G031700 Sobic004G031700 Sobic006G013500--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic006G013500--Sobic009G000500 Sobic003G197800 Sobic003G197800 Sobic006G013500--Sobic003G197800 Sobic001G094000 Sobic001G094000 Sobic006G013500--Sobic001G094000 Sobic006G046700 Sobic006G046700 Sobic006G013500--Sobic006G046700 Sobic001G206100--Sobic001G257300 Sobic001G206100--Sobic006G013500 Sobic002G320500 Sobic002G320500 Sobic001G206100--Sobic002G320500 Sobic001G206100--Sobic006G080300 Sobic002G157000 Sobic002G157000 Sobic001G206100--Sobic002G157000 Sobic001G206100--Sobic009G000500 Sobic004G213000 Sobic004G213000 Sobic001G206100--Sobic004G213000 Sobic001G356500 Sobic001G356500 Sobic001G206100--Sobic001G356500 Sobic002G161000 Sobic002G161000 Sobic001G206100--Sobic002G161000 Sobic001G257300--Sobic001G206100 Sobic001G257300--Sobic006G013500 Sobic003G170100 Sobic003G170100 Sobic001G257300--Sobic003G170100 Sobic001G257300--Sobic006G080300 Sobic003G200200 Sobic003G200200 Sobic001G257300--Sobic003G200200 Sobic002G001600 Sobic002G001600 Sobic001G257300--Sobic002G001600 Sobic001G257300--Sobic004G213000 Sobic001G257300--Sobic002G161000 Sobic001G162300 Sobic001G162300 Sobic001G257300--Sobic001G162300 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic010G065300 Sobic010G065300 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic007G065400 Sobic007G065400 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic002G153700 Sobic002G153700 Sobic001G306900--Sobic002G153700 Sobic001G306900--Sobic006G013500 Sobic001G306900--Sobic001G094000 Sobic003G268300 Sobic003G268300 Sobic006G080300--Sobic003G268300 Sobic006G080300--Sobic004G031700 Sobic006G080300--Sobic001G094000 Sobic001G477800 Sobic001G477800 Sobic006G080300--Sobic001G477800 Sobic002G313300 Sobic002G313300 Sobic006G080300--Sobic002G313300 Sobic006G080300--Sobic001G206100 Sobic006G080300--Sobic002G157000 Sobic006G080300--Sobic003G170100 Sobic006G080300--Sobic001G257300 Sobic004G031700--Sobic009G000500 Sobic003G445400 Sobic003G445400 Sobic004G031700--Sobic003G445400 Sobic001G544200 Sobic001G544200 Sobic004G031700--Sobic001G544200 Sobic004G031700--Sobic001G477800 Sobic004G031700--Sobic006G080300 Sobic006G128900 Sobic006G128900 Sobic004G031700--Sobic006G128900 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic002G158700 Sobic002G158700 Sobic004G031700--Sobic002G158700 Sobic009G000500--Sobic004G031700 Sobic009G000500--Sobic003G445400 Sobic009G000500--Sobic002G320500 Sobic009G000500--Sobic006G128900 Sobic006G133800 Sobic006G133800 Sobic009G000500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic009G000500--Sobic001G206100 Sobic003G197800--Sobic002G157000 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic002G151600 Sobic002G151600 Sobic003G197800--Sobic002G151600 Sobic003G197800--Sobic006G133800 Sobic009G065100 Sobic009G065100 Sobic003G197800--Sobic009G065100 Sobic003G173950 Sobic003G173950 Sobic003G197800--Sobic003G173950 Sobic002G248400 Sobic002G248400 Sobic003G197800--Sobic002G248400 Sobic003G197800--Sobic001G206100 Sobic007G011400 Sobic007G011400 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic001G094000--Sobic004G031700 Sobic001G094000--Sobic006G080300 Sobic008G153000 Sobic008G153000 Sobic006G046700--Sobic008G153000 Sobic006G046700--Sobic004G031700 Sobic007G026000 Sobic007G026000 Sobic006G046700--Sobic007G026000 Sobic006G046700--Sobic001G206100 Sobic006G046700--Sobic001G306900 Sobic006G046700--Sobic003G445400 Sobic001G425000 Sobic001G425000 Sobic006G046700--Sobic001G425000 Sobic001G405300 Sobic001G405300 Sobic006G046700--Sobic001G405300 Sobic006G046700--Sobic006G013500
Octagon: transcription factors


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