Gene annotation
Transcriptome id Sobic.001G511500.1,Sobic.001G511500.2
Synonym Sb01g047730
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WYY2
Pfam PF14259 PF00076
Panther DB PTHR23139 PTHR23139:SF56
NCBI CDD KOG0120; Splicing factor U2AF, large subunit (RRM superfamily)
KEGG Orthology K12837; splicing factor U2AF 65 kDa subunit
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G33440 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g04520.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053387
Brachypodium KQK23752 , KQK23751
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G000100 PWWP domain containing protein, expressed -
2 Sobic.006G209850 - -
3 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
4 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
5 Sobic.004G031700 expressed protein -
6 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
7 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
8 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
9 Sobic.006G032400 expressed protein -
10 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
11 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
12 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
13 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.003G268300 surp module family protein, putative, expressed -
15 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
16 Sobic.001G094000 expressed protein -
17 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
18 Sobic.001G464200 flap endonuclease, putative, expressed K10846: ERCC5, XPG, DNA excision repair protein ERCC-5
19 Sobic.003G372700 expressed protein -
20 Sobic.003G422300 recA protein, expressed K03553: recombination protein RecA


Gene co-expression network
sample Sobic001G511500 Sobic001G511500 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic001G511500--Sobic006G128900 Sobic003G119000 Sobic003G119000 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic007G000100--Sobic001G511500 Sobic007G000100--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic007G000100--Sobic008G173900 Sobic007G000100--Sobic003G445400 Sobic007G000100--Sobic003G119000 Sobic002G153700 Sobic002G153700 Sobic007G000100--Sobic002G153700 Sobic009G000500 Sobic009G000500 Sobic007G000100--Sobic009G000500 Sobic003G241800 Sobic003G241800 Sobic007G000100--Sobic003G241800 Sobic007G000100--Sobic004G031700 Sobic006G209850--Sobic006G128900 Sobic006G209850--Sobic001G511500 Sobic003G280800 Sobic003G280800 Sobic006G209850--Sobic003G280800 Sobic010G277500 Sobic010G277500 Sobic006G209850--Sobic010G277500 Sobic008G024600 Sobic008G024600 Sobic006G209850--Sobic008G024600 Sobic002G053000 Sobic002G053000 Sobic006G209850--Sobic002G053000 Sobic010G129200 Sobic010G129200 Sobic006G209850--Sobic010G129200 Sobic004G145500 Sobic004G145500 Sobic006G209850--Sobic004G145500 Sobic002G243900 Sobic002G243900 Sobic006G209850--Sobic002G243900 Sobic006G128900--Sobic006G209850 Sobic006G128900--Sobic001G511500 Sobic006G128900--Sobic004G031700 Sobic006G128900--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic006G128900--Sobic001G090400 Sobic006G128900--Sobic003G445400 Sobic003G268300 Sobic003G268300 Sobic006G128900--Sobic003G268300 Sobic001G477800 Sobic001G477800 Sobic006G128900--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic006G128900--Sobic002G157000 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G119000--Sobic003G280800 Sobic007G065400 Sobic007G065400 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic003G119000--Sobic001G511500 Sobic002G309600 Sobic002G309600 Sobic003G119000--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic003G119000--Sobic001G241200 Sobic004G031700--Sobic009G000500 Sobic004G031700--Sobic003G445400 Sobic001G544200 Sobic001G544200 Sobic004G031700--Sobic001G544200 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic001G094000 Sobic001G094000 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic002G158700 Sobic002G158700 Sobic004G031700--Sobic002G158700 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic010G065300 Sobic010G065300 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic001G306900--Sobic007G065400 Sobic001G306900--Sobic001G511500 Sobic001G306900--Sobic004G145500 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G306900--Sobic001G094000 Sobic003G445400--Sobic004G031700 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G445400--Sobic003G307000 Sobic003G445400--Sobic002G158700 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000 Sobic003G307000--Sobic007G000100 Sobic003G307000--Sobic002G153700 Sobic003G307000--Sobic003G445400 Sobic003G307000--Sobic009G000500 Sobic003G307000--Sobic001G511500 Sobic003G307000--Sobic001G306900 Sobic003G307000--Sobic004G031700 Sobic003G394300 Sobic003G394300 Sobic003G307000--Sobic003G394300 Sobic003G307000--Sobic010G065300 Sobic002G320500 Sobic002G320500 Sobic006G032400--Sobic002G320500 Sobic002G248400 Sobic002G248400 Sobic006G032400--Sobic002G248400 Sobic005G015900 Sobic005G015900 Sobic006G032400--Sobic005G015900 Sobic003G241200 Sobic003G241200 Sobic006G032400--Sobic003G241200 Sobic009G210500 Sobic009G210500 Sobic006G032400--Sobic009G210500 Sobic006G032400--Sobic001G090400 Sobic006G173100 Sobic006G173100 Sobic006G032400--Sobic006G173100 Sobic004G271000 Sobic004G271000 Sobic006G032400--Sobic004G271000 Sobic006G032400--Sobic001G094000
Octagon: transcription factors


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