Gene annotation
Transcriptome id Sobic.003G422300.2,Sobic.003G422300.1
Synonym RECA3
Functional annotation recA protein, expressed
UniProt A0A1B6Q851 , C5XHR9
Pfam PF08423
Panther DB PTHR22942 PTHR22942:SF41
NCBI CDD KOG1433; DNA repair protein RAD51/RHP55
KEGG Orthology K03553; recombination protein RecA
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10140 : RECA homolog 3
RAP-DB (Rice) LOC_Os01g71690.2 : recA protein, expressed
MaizeGDB (Corn) Zm00025a026060
Brachypodium PNT73589 , KQK10202 , PNT73046
Barley HORVU3Hr1G105820.19 , HORVU3Hr1G105820.18 , HORVU3Hr1G105820.17 , HORVU3Hr1G105820.16 , HORVU3Hr1G105820.15 , HORVU3Hr1G105820.13 , HORVU3Hr1G105820.12 , HORVU3Hr1G105820.11 , HORVU3Hr1G105820.10 , HORVU3Hr1G105820.31 , HORVU3Hr1G105820.30 , HORVU3Hr1G105820.33 , HORVU3Hr1G105820.32 , HORVU3Hr1G105820.35 , HORVU3Hr1G105820.34 , HORVU3Hr1G105820.37 , HORVU3Hr1G105820.36 , HORVU3Hr1G105820.39 , HORVU3Hr1G105820.38 , HORVU3Hr1G105820.7 , HORVU3Hr1G105820.6 , HORVU3Hr1G105820.5 , HORVU3Hr1G105820.4 , HORVU3Hr1G105820.3 , HORVU3Hr1G105820.9 , HORVU3Hr1G105820.8 , HORVU3Hr1G105820.26 , HORVU3Hr1G105820.27 , HORVU3Hr1G105820.24 , HORVU3Hr1G105820.25 , HORVU3Hr1G105820.22 , HORVU3Hr1G105820.23 , HORVU3Hr1G105820.21 , HORVU3Hr1G105820.28 , HORVU3Hr1G105820.29 , HORVU3Hr1G105820.40 , HORVU3Hr1G105820.41 , HORVU3Hr1G105820.42 , HORVU3Hr1G105820.43 , HORVU3Hr1G105820.44 , HORVU3Hr1G105820.45
Wheat TraesCS3D02G479500 , TraesCS3B02G530900 , TraesCS3A02G484100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G268300 surp module family protein, putative, expressed -
2 Sobic.002G248400 ENT domain containing protein, expressed -
3 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
4 Sobic.001G094000 expressed protein -
5 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
6 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
7 Sobic.006G060100 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
8 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
9 Sobic.008G078100 EDM2, putative, expressed -
10 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
11 Sobic.009G210500 expressed protein -
12 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
13 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
14 Sobic.003G108700 RNA recognition motif, putative, expressed -
15 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
17 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
18 Sobic.007G096600 - -
19 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
20 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit


Gene co-expression network
sample Sobic003G422300 Sobic003G422300 Sobic003G268300 Sobic003G268300 Sobic003G422300--Sobic003G268300 Sobic002G248400 Sobic002G248400 Sobic003G422300--Sobic002G248400 Sobic006G128900 Sobic006G128900 Sobic003G422300--Sobic006G128900 Sobic001G094000 Sobic001G094000 Sobic003G422300--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic003G422300--Sobic002G157000 Sobic001G090400 Sobic001G090400 Sobic003G422300--Sobic001G090400 Sobic006G060100 Sobic006G060100 Sobic003G422300--Sobic006G060100 Sobic001G511500 Sobic001G511500 Sobic003G422300--Sobic001G511500 Sobic008G078100 Sobic008G078100 Sobic003G422300--Sobic008G078100 Sobic007G096600 Sobic007G096600 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic001G420200 Sobic001G420200 Sobic003G268300--Sobic001G420200 Sobic003G200200 Sobic003G200200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic007G178700 Sobic007G178700 Sobic003G268300--Sobic007G178700 Sobic007G037900 Sobic007G037900 Sobic003G268300--Sobic007G037900 Sobic008G173900 Sobic008G173900 Sobic003G268300--Sobic008G173900 Sobic002G248400--Sobic002G157000 Sobic003G108700 Sobic003G108700 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G320500 Sobic002G320500 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic006G209850 Sobic006G209850 Sobic006G128900--Sobic006G209850 Sobic006G128900--Sobic001G511500 Sobic004G031700 Sobic004G031700 Sobic006G128900--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic006G128900--Sobic009G000500 Sobic006G128900--Sobic001G090400 Sobic003G445400 Sobic003G445400 Sobic006G128900--Sobic003G445400 Sobic006G128900--Sobic003G268300 Sobic001G477800 Sobic001G477800 Sobic006G128900--Sobic001G477800 Sobic006G128900--Sobic002G157000 Sobic007G011400 Sobic007G011400 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic006G173100 Sobic006G173100 Sobic001G090400--Sobic006G173100 Sobic004G057400 Sobic004G057400 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic001G090400--Sobic002G320500 Sobic001G090400--Sobic009G000500 Sobic001G090400--Sobic002G157300 Sobic004G205600 Sobic004G205600 Sobic001G090400--Sobic004G205600 Sobic001G090400--Sobic002G248400 Sobic006G060100--Sobic003G187400 Sobic006G060100--Sobic003G268300 Sobic005G149500 Sobic005G149500 Sobic006G060100--Sobic005G149500 Sobic003G176400 Sobic003G176400 Sobic006G060100--Sobic003G176400 Sobic006G060100--Sobic001G094000 Sobic006G060100--Sobic003G422300 Sobic006G060100--Sobic006G080300 Sobic006G060100--Sobic002G157300 Sobic006G060100--Sobic007G011400 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic003G119000 Sobic003G119000 Sobic001G511500--Sobic003G119000 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic001G511500--Sobic006G032400 Sobic008G078100--Sobic001G094000 Sobic008G054500 Sobic008G054500 Sobic008G078100--Sobic008G054500 Sobic008G078100--Sobic009G040700 Sobic008G078100--Sobic001G477800 Sobic008G078100--Sobic003G187400 Sobic001G544200 Sobic001G544200 Sobic008G078100--Sobic001G544200 Sobic007G185900 Sobic007G185900 Sobic008G078100--Sobic007G185900 Sobic008G078100--Sobic003G422300 Sobic004G196700 Sobic004G196700 Sobic008G078100--Sobic004G196700
Octagon: transcription factors


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