Gene annotation
Transcriptome id Sobic.003G108700.14,Sobic.003G108700.1,Sobic.003G108700.3,Sobic.003G108700.8,Sobic.003G108700.4,Sobic.003G108700.13,Sobic.003G108700.12,Sobic.003G108700.6,Sobic.003G108700.11,Sobic.003G108700.9,Sobic.003G108700.10,Sobic.003G108700.5,Sobic.003G108700.7
Synonym Sb03g009130
Functional annotation RNA recognition motif, putative, expressed
UniProt A0A1W0VWW5 , A0A1W0VWT0 , C5XFM7
Pfam PF00076 PF00630
Panther DB PTHR32343 PTHR32343:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G23900 : RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os01g01150.2,LOC_Os01g01150.1,LOC_Os01g01150.3 : RNA recognition motif, putative, expressed
MaizeGDB (Corn) Zm00025a035384 , Zm00025a023871
Brachypodium KQK02787
Barley HORVU3Hr1G014950.10 , HORVU3Hr1G014950.11 , HORVU3Hr1G014950.12 , HORVU3Hr1G014950.13 , HORVU3Hr1G014950.14 , HORVU3Hr1G014950.15 , HORVU3Hr1G014950.16 , HORVU3Hr1G014950.17 , HORVU3Hr1G014950.34 , HORVU3Hr1G014950.35 , HORVU3Hr1G014950.29 , HORVU3Hr1G014950.28 , HORVU3Hr1G014950.25 , HORVU3Hr1G014950.24 , HORVU3Hr1G014950.27 , HORVU3Hr1G014950.26 , HORVU3Hr1G014950.21 , HORVU3Hr1G014950.23 , HORVU3Hr1G014950.22 , HORVU3Hr1G014950.8 , HORVU3Hr1G014950.9 , HORVU3Hr1G014950.2 , HORVU3Hr1G014950.3 , HORVU3Hr1G014950.1 , HORVU3Hr1G014950.6 , HORVU3Hr1G014950.7 , HORVU3Hr1G014950.4 , HORVU3Hr1G014950.5 , HORVU3Hr1G014950.32 , HORVU3Hr1G014950.33 , HORVU3Hr1G014950.30 , HORVU3Hr1G014950.31 , HORVU3Hr1G014950.36 , HORVU3Hr1G014950.37 , HORVU3Hr1G014950.38 , HORVU3Hr1G014950.39
Wheat TraesCS3A02G083800 , TraesCS3A02G083800 , TraesCS3D02G083800 , TraesCS3D02G083800 , TraesCS3B02G098800
Populus -


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cDNA sequences
Sobic.003G108700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G248400 ENT domain containing protein, expressed -
2 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
3 Sobic.003G268300 surp module family protein, putative, expressed -
4 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
5 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
6 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
7 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
8 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
9 Sobic.007G167500 expressed protein -
10 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
11 Sobic.004G213000 AT hook motif family protein, expressed -
12 Sobic.002G320500 MYB family transcription factor, putative, expressed -
13 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
14 Sobic.001G206100 expressed protein -
15 Sobic.003G422300 recA protein, expressed K03553: recombination protein RecA
16 Sobic.002G380500 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
17 Sobic.001G347300 splicing factor, arginine/serine-rich 16, putative, expressed K13168: splicing factor, arginine/serine-rich 16
18 Sobic.007G096600 - -
19 Sobic.003G298100 one zinc finger protein, putative, expressed -
20 Sobic.006G080300 SET domain containing protein, expressed -


Gene co-expression network
sample Sobic003G108700 Sobic003G108700 Sobic002G248400 Sobic002G248400 Sobic003G108700--Sobic002G248400 Sobic002G157000 Sobic002G157000 Sobic003G108700--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic003G108700--Sobic003G268300 Sobic004G257400 Sobic004G257400 Sobic003G108700--Sobic004G257400 Sobic007G126600 Sobic007G126600 Sobic003G108700--Sobic007G126600 Sobic001G420200 Sobic001G420200 Sobic003G108700--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic003G108700--Sobic008G173900 Sobic003G200200 Sobic003G200200 Sobic003G108700--Sobic003G200200 Sobic007G167500 Sobic007G167500 Sobic003G108700--Sobic007G167500 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G320500 Sobic002G320500 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic001G090400 Sobic001G090400 Sobic002G248400--Sobic001G090400 Sobic002G248400--Sobic004G257400 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic002G157000--Sobic003G108700 Sobic001G094000 Sobic001G094000 Sobic002G157000--Sobic001G094000 Sobic007G096600 Sobic007G096600 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic007G178700 Sobic007G178700 Sobic003G268300--Sobic007G178700 Sobic007G037900 Sobic007G037900 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic004G257400--Sobic002G248400 Sobic004G257400--Sobic003G108700 Sobic008G054500 Sobic008G054500 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic007G026300 Sobic007G026300 Sobic004G257400--Sobic007G026300 Sobic003G073000 Sobic003G073000 Sobic004G257400--Sobic003G073000 Sobic004G257400--Sobic001G090400 Sobic004G257400--Sobic007G167500 Sobic001G251700 Sobic001G251700 Sobic004G257400--Sobic001G251700 Sobic008G192600 Sobic008G192600 Sobic007G126600--Sobic008G192600 Sobic003G119000 Sobic003G119000 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G065400 Sobic007G065400 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic002G006900 Sobic002G006900 Sobic007G126600--Sobic002G006900 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic001G241200 Sobic001G241200 Sobic007G126600--Sobic001G241200 Sobic001G274200 Sobic001G274200 Sobic001G420200--Sobic001G274200 Sobic001G420200--Sobic002G157000 Sobic001G420200--Sobic003G268300 Sobic001G420200--Sobic008G173900 Sobic001G420200--Sobic002G248400 Sobic001G420200--Sobic007G096600 Sobic001G420200--Sobic007G037900 Sobic002G144933 Sobic002G144933 Sobic001G420200--Sobic002G144933 Sobic001G420200--Sobic007G178700 Sobic008G173900--Sobic002G157000 Sobic008G173900--Sobic002G144933 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic008G173900--Sobic007G096600 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic003G200200--Sobic001G251700 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic007G167500--Sobic003G119000 Sobic007G167500--Sobic002G006900 Sobic003G397800 Sobic003G397800 Sobic007G167500--Sobic003G397800 Sobic007G167500--Sobic007G096600 Sobic010G101800 Sobic010G101800 Sobic007G167500--Sobic010G101800 Sobic007G167500--Sobic007G065400 Sobic009G210500 Sobic009G210500 Sobic007G167500--Sobic009G210500 Sobic003G332800 Sobic003G332800 Sobic007G167500--Sobic003G332800 Sobic003G372700 Sobic003G372700 Sobic007G167500--Sobic003G372700
Octagon: transcription factors


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