Gene annotation
| Transcriptome id | Sobic.002G380500.1,Sobic.002G380500.2,Sobic.002G380500.3,Sobic.002G380500.4 |
|---|---|
| Synonym | sb-SC31, serine/arginine-rich (SR) family, SC35, ATSC35, Sb02g039740 |
| Functional annotation | Putative splicing factor (PubMedID : 24356560) RNA recognition motif containing protein, expressed |
| UniProt | A0A1B6QFQ0 , M1HAH1 , M1HJ16 , M1H9A6 |
| Pfam | PF00076 |
| Panther DB | PTHR23147 PTHR23147:SF9 PTHR23147 PTHR23147:SF10 |
| NCBI CDD | KOG0114; Predicted RNA-binding protein (RRM superfamily) KOG4207Predicted splicing factor, SR protein superfamily |
| KEGG Orthology | K12891; splicing factor, arginine/serine-rich 2 |
| Gene Ontology | GO:0003676; nucleic acid binding |
Orthologs (automatic annotation)
| TAIR | AT5G64200 : ortholog of human splicing factor SC35 |
|---|---|
| RAP-DB (Rice) | LOC_Os07g43050.1 : RNA recognition motif containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a048804 , Zm00025a015241 |
| Brachypodium | PNT74745 , KQK15234 , KQK15235 , KQK15236 , KQK15237 |
| Barley | HORVU2Hr1G029660.11 , HORVU2Hr1G029660.10 , HORVU2Hr1G029660.1 , HORVU2Hr1G029660.3 , HORVU2Hr1G029660.2 , HORVU2Hr1G029660.5 , HORVU2Hr1G029660.7 , HORVU2Hr1G029660.9 , HORVU2Hr1G029660.8 , HORVU2Hr1G029660.4 |
| Wheat | TraesCS2D02G169700 , TraesCS2D02G169700 , TraesCS2D02G169700 , TraesCS2B02G188600 , TraesCS2B02G188600 , TraesCS2B02G188600 , TraesCS2B02G188600 , TraesCS2B02G188600 , TraesCS2D02G169700 , TraesCS2A02G162700 , TraesCS2A02G162700 , TraesCS2A02G162700 , TraesCS2D02G169700 |
| Populus | - |
JBrowse
| Sobic.002G380500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G173900 | "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed | - |
| 2 | Sobic.003G170100 | - | - |
| 3 | Sobic.001G420200 | RNA recognition motif containing protein, putative, expressed | K11093: U1 small nuclear ribonucleoprotein 70kDa |
| 4 | Sobic.002G144933 | - | - |
| 5 | Sobic.002G157000 | enhancer of polycomb, putative, expressed | K11322: enhancer of polycomb-like protein |
| 6 | Sobic.003G200200 | SIT4 phosphatase-associated protein domain containing protein, expressed | K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3 |
| 7 | Sobic.003G108700 | RNA recognition motif, putative, expressed | - |
| 8 | Sobic.003G268300 | surp module family protein, putative, expressed | - |
| 9 | Sobic.005G110472 | - | - |
| 10 | Sobic.009G065100 | splicing factor, putative, expressed | K12850: pre-mRNA-splicing factor 38B |
| 11 | Sobic.001G395500 | SET domain containing protein, expressed | K11430: [histone H3]-lysine27 N-trimethyltransferase EZH2 |
| 12 | Sobic.001G533700 | STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 13 | Sobic.003G197800 | peptidyl-prolyl cis-trans isomerase, putative, expressed | K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10 |
| 14 | Sobic.007G037900 | oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed | - |
| 15 | Sobic.004G290800 | GRAS family transcription factor(PubMedID : 23915383)@scarecrow, putative, expressed | - |
| 16 | Sobic.002G248400 | ENT domain containing protein, expressed | - |
| 17 | Sobic.009G127900 | - | - |
| 18 | Sobic.005G001800 | - | - |
| 19 | Sobic.001G347300 | splicing factor, arginine/serine-rich 16, putative, expressed | K13168: splicing factor, arginine/serine-rich 16 |
| 20 | Sobic.005G144400 | - | - |
Gene co-expression network
Octagon: transcription factors
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