Gene annotation
Transcriptome id Sobic.004G290800.1
Synonym ATHAM3, Sb04g032570, SCL6-IV, HAM3
Functional annotation GRAS family transcription factor (PubMedID : 23915383)
scarecrow, putative, expressed
UniProt C5Y1F5
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF64
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G00150 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os02g44370.1 : scarecrow, putative, expressed
MaizeGDB (Corn) Zm00025a032229 , Zm00025a021419 , Zm00025a056845 , Zm00025a010287 , Zm00025a038031
Brachypodium PNT69189
Barley HORVU6Hr1G063650.2 , HORVU6Hr1G063650.3 , HORVU6Hr1G063650.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G127900 - -
2 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
3 Sobic.007G178700 - -
4 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
5 Sobic.003G268300 surp module family protein, putative, expressed -
6 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
7 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
8 Sobic.001G111900 - -
9 Sobic.001G446900 arginyl-tRNA synthetase, putative, expressed -
10 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
11 Sobic.006G009400 G-patch domain containing protein, expressed -
12 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9
13 Sobic.001G486300 phosphatidylinositol transfer, putative, expressed -
14 Sobic.009G134500 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
15 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
16 Sobic.005G077466 - -
17 Sobic.002G144933 - -
18 Sobic.005G110472 - -
19 Sobic.009G140500 no apical meristem protein, putative, expressed -
20 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic004G290800 Sobic004G290800 Sobic009G127900 Sobic009G127900 Sobic004G290800--Sobic009G127900 Sobic001G420200 Sobic001G420200 Sobic004G290800--Sobic001G420200 Sobic007G178700 Sobic007G178700 Sobic004G290800--Sobic007G178700 Sobic007G037900 Sobic007G037900 Sobic004G290800--Sobic007G037900 Sobic003G268300 Sobic003G268300 Sobic004G290800--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic004G290800--Sobic001G162300 Sobic002G157000 Sobic002G157000 Sobic004G290800--Sobic002G157000 Sobic001G111900 Sobic001G111900 Sobic004G290800--Sobic001G111900 Sobic001G446900 Sobic001G446900 Sobic004G290800--Sobic001G446900 Sobic009G127900--Sobic007G178700 Sobic009G127900--Sobic003G268300 Sobic009G127900--Sobic001G446900 Sobic006G066650 Sobic006G066650 Sobic009G127900--Sobic006G066650 Sobic009G127900--Sobic004G290800 Sobic010G026400 Sobic010G026400 Sobic009G127900--Sobic010G026400 Sobic009G127900--Sobic007G037900 Sobic008G173900 Sobic008G173900 Sobic009G127900--Sobic008G173900 Sobic009G127900--Sobic001G111900 Sobic001G274200 Sobic001G274200 Sobic001G420200--Sobic001G274200 Sobic001G420200--Sobic002G157000 Sobic001G420200--Sobic003G268300 Sobic001G420200--Sobic008G173900 Sobic002G248400 Sobic002G248400 Sobic001G420200--Sobic002G248400 Sobic007G096600 Sobic007G096600 Sobic001G420200--Sobic007G096600 Sobic001G420200--Sobic007G037900 Sobic002G144933 Sobic002G144933 Sobic001G420200--Sobic002G144933 Sobic001G420200--Sobic007G178700 Sobic007G178700--Sobic009G127900 Sobic007G178700--Sobic003G268300 Sobic002G243900 Sobic002G243900 Sobic007G178700--Sobic002G243900 Sobic003G087400 Sobic003G087400 Sobic007G178700--Sobic003G087400 Sobic004G007100 Sobic004G007100 Sobic007G178700--Sobic004G007100 Sobic007G178700--Sobic001G162300 Sobic007G178700--Sobic001G446900 Sobic005G144400 Sobic005G144400 Sobic007G178700--Sobic005G144400 Sobic007G178700--Sobic001G420200 Sobic007G037900--Sobic003G268300 Sobic007G037900--Sobic001G420200 Sobic006G246900 Sobic006G246900 Sobic007G037900--Sobic006G246900 Sobic007G037900--Sobic002G144933 Sobic007G037900--Sobic001G274200 Sobic007G037900--Sobic009G127900 Sobic007G037900--Sobic001G162300 Sobic007G037900--Sobic004G290800 Sobic007G037900--Sobic002G157000 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G200200 Sobic003G200200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic003G268300--Sobic009G127900 Sobic003G268300--Sobic007G178700 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic001G162300--Sobic002G157000 Sobic001G162300--Sobic006G246900 Sobic001G162300--Sobic003G268300 Sobic001G162300--Sobic007G178700 Sobic006G082600 Sobic006G082600 Sobic001G162300--Sobic006G082600 Sobic007G011400 Sobic007G011400 Sobic001G162300--Sobic007G011400 Sobic001G094000 Sobic001G094000 Sobic001G162300--Sobic001G094000 Sobic003G170100 Sobic003G170100 Sobic001G162300--Sobic003G170100 Sobic001G477800 Sobic001G477800 Sobic001G162300--Sobic001G477800 Sobic002G157000--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic010G056000 Sobic010G056000 Sobic001G111900--Sobic010G056000 Sobic009G161600 Sobic009G161600 Sobic001G111900--Sobic009G161600 Sobic001G111900--Sobic009G127900 Sobic001G454401 Sobic001G454401 Sobic001G111900--Sobic001G454401 Sobic001G111900--Sobic007G178700 Sobic005G077466 Sobic005G077466 Sobic001G111900--Sobic005G077466 Sobic006G262200 Sobic006G262200 Sobic001G111900--Sobic006G262200 Sobic003G084900 Sobic003G084900 Sobic001G111900--Sobic003G084900 Sobic006G009400 Sobic006G009400 Sobic001G111900--Sobic006G009400 Sobic001G446900--Sobic007G178700 Sobic001G446900--Sobic009G127900 Sobic001G446900--Sobic006G082600 Sobic001G446900--Sobic004G290800 Sobic001G446900--Sobic003G268300 Sobic007G137900 Sobic007G137900 Sobic001G446900--Sobic007G137900 Sobic001G446900--Sobic010G026400 Sobic009G104201 Sobic009G104201 Sobic001G446900--Sobic009G104201 Sobic001G446900--Sobic001G111900
Octagon: transcription factors


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