Gene annotation
Transcriptome id Sobic.001G274200.1
Synonym U1SNRNP, U1-70K, Sb01g026920
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WPV4
Pfam PF00076 PF12220
Panther DB PTHR13952 PTHR13952:SF5
NCBI CDD KOG0107; Alternative splicing factor SRp20/9G8 (RRM superfamily)
KEGG Orthology K11093; U1 small nuclear ribonucleoprotein 70kDa
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G50670 : U1 small nuclear ribonucleoprotein-70K
RAP-DB (Rice) LOC_Os10g02630.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a018009
Brachypodium KQJ97386 , KQJ96167
Barley HORVU1Hr1G046870.4 , HORVU1Hr1G046870.5 , HORVU1Hr1G046870.6 , HORVU1Hr1G046870.7 , HORVU1Hr1G046870.1 , HORVU1Hr1G046870.8 , HORVU1Hr1G046870.9 , HORVU1Hr1G046870.2 , HORVU1Hr1G046870.3 , HORVU1Hr1G030660.18 , HORVU1Hr1G030660.16 , HORVU1Hr1G030660.17 , HORVU1Hr1G030660.14 , HORVU1Hr1G030660.15 , HORVU1Hr1G030660.12 , HORVU1Hr1G030660.13 , HORVU1Hr1G030660.10 , HORVU1Hr1G030660.11 , HORVU1Hr1G030660.8 , HORVU1Hr1G030660.9 , HORVU1Hr1G030660.4 , HORVU1Hr1G030660.5 , HORVU1Hr1G030660.6 , HORVU1Hr1G030660.7 , HORVU1Hr1G030660.1 , HORVU1Hr1G030660.2 , HORVU1Hr1G030660.3 , HORVU1Hr1G046870.12 , HORVU1Hr1G046870.10 , HORVU1Hr1G046870.11
Wheat TraesCS1A02G128600 , TraesCS1D02G162500 , TraesCS1D02G162500 , TraesCS1D02G162500 , TraesCS1D02G162500 , TraesCS1B02G146600 , TraesCS1D02G124800 , TraesCS1B02G203600 , TraesCS1B02G203600 , TraesCS1A02G176500 , TraesCS1A02G176500 , TraesCS1A02G176500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
2 Sobic.007G096600 - -
3 Sobic.003G268300 surp module family protein, putative, expressed -
4 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
5 Sobic.002G144933 - -
6 Sobic.001G133466 - -
7 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
8 Sobic.002G243900 - -
9 Sobic.010G123901 - -
10 Sobic.001G067850 - -
11 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
12 Sobic.009G140500 no apical meristem protein, putative, expressed -
13 Sobic.005G144400 - -
14 Sobic.002G248400 ENT domain containing protein, expressed -
15 Sobic.005G077466 - -
16 Sobic.006G209850 - -
17 Sobic.003G429650 - -
18 Sobic.010G136600 - -
19 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
20 Sobic.007G178700 - -


Gene co-expression network
sample Sobic001G274200 Sobic001G274200 Sobic001G420200 Sobic001G420200 Sobic001G274200--Sobic001G420200 Sobic007G096600 Sobic007G096600 Sobic001G274200--Sobic007G096600 Sobic003G268300 Sobic003G268300 Sobic001G274200--Sobic003G268300 Sobic008G173900 Sobic008G173900 Sobic001G274200--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic007G037900 Sobic007G037900 Sobic001G274200--Sobic007G037900 Sobic002G243900 Sobic002G243900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901 Sobic001G420200--Sobic001G274200 Sobic002G157000 Sobic002G157000 Sobic001G420200--Sobic002G157000 Sobic001G420200--Sobic003G268300 Sobic001G420200--Sobic008G173900 Sobic002G248400 Sobic002G248400 Sobic001G420200--Sobic002G248400 Sobic001G420200--Sobic007G096600 Sobic001G420200--Sobic007G037900 Sobic001G420200--Sobic002G144933 Sobic007G178700 Sobic007G178700 Sobic001G420200--Sobic007G178700 Sobic007G096600--Sobic002G243900 Sobic007G096600--Sobic003G268300 Sobic003G176500 Sobic003G176500 Sobic007G096600--Sobic003G176500 Sobic007G096600--Sobic001G274200 Sobic003G200200 Sobic003G200200 Sobic007G096600--Sobic003G200200 Sobic005G144400 Sobic005G144400 Sobic007G096600--Sobic005G144400 Sobic003G148000 Sobic003G148000 Sobic007G096600--Sobic003G148000 Sobic003G332800 Sobic003G332800 Sobic007G096600--Sobic003G332800 Sobic007G096600--Sobic001G420200 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic003G268300--Sobic007G178700 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic008G173900--Sobic002G157000 Sobic008G173900--Sobic002G144933 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic008G173900--Sobic007G096600 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic002G144933--Sobic001G420200 Sobic002G144933--Sobic003G268300 Sobic002G144933--Sobic001G274200 Sobic002G144933--Sobic007G037900 Sobic004G145500 Sobic004G145500 Sobic002G144933--Sobic004G145500 Sobic003G170100 Sobic003G170100 Sobic002G144933--Sobic003G170100 Sobic009G065100 Sobic009G065100 Sobic002G144933--Sobic009G065100 Sobic009G161600 Sobic009G161600 Sobic001G133466--Sobic009G161600 Sobic001G133466--Sobic001G274200 Sobic001G133466--Sobic007G096600 Sobic001G133466--Sobic001G420200 Sobic001G133466--Sobic008G173900 Sobic001G111900 Sobic001G111900 Sobic001G133466--Sobic001G111900 Sobic001G133466--Sobic010G123901 Sobic001G133466--Sobic002G243900 Sobic001G133466--Sobic003G176500 Sobic007G037900--Sobic003G268300 Sobic007G037900--Sobic001G420200 Sobic006G246900 Sobic006G246900 Sobic007G037900--Sobic006G246900 Sobic007G037900--Sobic002G144933 Sobic007G037900--Sobic001G274200 Sobic007G037900--Sobic009G127900 Sobic001G162300 Sobic001G162300 Sobic007G037900--Sobic001G162300 Sobic004G290800 Sobic004G290800 Sobic007G037900--Sobic004G290800 Sobic007G037900--Sobic002G157000 Sobic002G243900--Sobic007G096600 Sobic004G007100 Sobic004G007100 Sobic002G243900--Sobic004G007100 Sobic002G243900--Sobic005G144400 Sobic002G243900--Sobic003G148000 Sobic006G048500 Sobic006G048500 Sobic002G243900--Sobic006G048500 Sobic002G243900--Sobic007G178700 Sobic002G243900--Sobic003G268300 Sobic002G145101 Sobic002G145101 Sobic002G243900--Sobic002G145101 Sobic002G243900--Sobic003G176500 Sobic010G123901--Sobic001G274200 Sobic009G140500 Sobic009G140500 Sobic010G123901--Sobic009G140500 Sobic010G123901--Sobic001G133466 Sobic010G123901--Sobic001G420200 Sobic001G067850 Sobic001G067850 Sobic010G123901--Sobic001G067850 Sobic010G124001 Sobic010G124001 Sobic010G123901--Sobic010G124001 Sobic010G123901--Sobic007G096600 Sobic010G123901--Sobic007G037900 Sobic002G203200 Sobic002G203200 Sobic010G123901--Sobic002G203200
Octagon: transcription factors


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