Gene annotation
Transcriptome id Sobic.006G209850.2,Sobic.006G209850.1
Synonym -
Functional annotation -
UniProt A0A1Z5REV2 , A0A1Z5REX1
Pfam PF00628 PF13871 PF13872
Panther DB PTHR12706 PTHR12706:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G79350 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os08g12680.1 : zinc finger domain, LSD1 subclass family protein, expressed
MaizeGDB (Corn) Zm00025a056991 , Zm00025a054893
Brachypodium KQJ95604 , KQJ84484
Barley HORVU2Hr1G100080.20 , HORVU7Hr1G095820.4 , HORVU2Hr1G100080.7 , HORVU2Hr1G100080.6 , HORVU2Hr1G100080.5 , HORVU2Hr1G100080.4 , HORVU2Hr1G100080.3 , HORVU2Hr1G100080.2 , HORVU2Hr1G100080.1 , HORVU2Hr1G100080.9 , HORVU7Hr1G095820.1 , HORVU7Hr1G095820.3 , HORVU7Hr1G095820.5 , HORVU2Hr1G100080.10 , HORVU2Hr1G100080.8 , HORVU2Hr1G100080.17 , HORVU2Hr1G100080.16 , HORVU2Hr1G100080.14 , HORVU7Hr1G095820.2 , HORVU2Hr1G100080.11 , HORVU2Hr1G100080.19 , HORVU2Hr1G100080.18 , HORVU2Hr1G100080.15 , HORVU2Hr1G100080.13 , HORVU2Hr1G100080.12
Wheat TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS2A02G428300 , TraesCS7D02G403900 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS2D02G426400 , TraesCS7B02G310100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
2 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
3 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
4 Sobic.010G277500 expressed protein -
5 Sobic.008G024600 expressed protein -
6 Sobic.002G053000 expressed protein -
7 Sobic.010G129200 - -
8 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
9 Sobic.002G243900 - -
10 Sobic.005G077466 - -
11 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
12 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
13 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
14 Sobic.006G021250 - -
15 Sobic.003G268300 surp module family protein, putative, expressed -
16 Sobic.K042000 non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
17 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
18 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
19 Sobic.002G144933 - -
20 Sobic.009G210500 expressed protein -


Gene co-expression network
sample Sobic006G209850 Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic006G209850--Sobic006G128900 Sobic001G511500 Sobic001G511500 Sobic006G209850--Sobic001G511500 Sobic003G280800 Sobic003G280800 Sobic006G209850--Sobic003G280800 Sobic010G277500 Sobic010G277500 Sobic006G209850--Sobic010G277500 Sobic008G024600 Sobic008G024600 Sobic006G209850--Sobic008G024600 Sobic002G053000 Sobic002G053000 Sobic006G209850--Sobic002G053000 Sobic010G129200 Sobic010G129200 Sobic006G209850--Sobic010G129200 Sobic004G145500 Sobic004G145500 Sobic006G209850--Sobic004G145500 Sobic002G243900 Sobic002G243900 Sobic006G209850--Sobic002G243900 Sobic006G128900--Sobic006G209850 Sobic006G128900--Sobic001G511500 Sobic004G031700 Sobic004G031700 Sobic006G128900--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic006G128900--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic006G128900--Sobic001G090400 Sobic003G445400 Sobic003G445400 Sobic006G128900--Sobic003G445400 Sobic003G268300 Sobic003G268300 Sobic006G128900--Sobic003G268300 Sobic001G477800 Sobic001G477800 Sobic006G128900--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic006G128900--Sobic002G157000 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic003G119000 Sobic003G119000 Sobic001G511500--Sobic003G119000 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic002G309600 Sobic002G309600 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic003G280800--Sobic006G209850 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic004G208900 Sobic004G208900 Sobic010G277500--Sobic004G208900 Sobic010G277500--Sobic006G209850 Sobic007G065400 Sobic007G065400 Sobic010G277500--Sobic007G065400 Sobic009G260500 Sobic009G260500 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic010G277500--Sobic004G009600 Sobic008G028700 Sobic008G028700 Sobic010G277500--Sobic008G028700 Sobic004G258700 Sobic004G258700 Sobic010G277500--Sobic004G258700 Sobic010G277500--Sobic006G216800 Sobic008G024600--Sobic006G209850 Sobic008G024600--Sobic002G053000 Sobic008G024600--Sobic006G128900 Sobic009G040700 Sobic009G040700 Sobic008G024600--Sobic009G040700 Sobic008G024600--Sobic010G129200 Sobic002G158700 Sobic002G158700 Sobic008G024600--Sobic002G158700 Sobic002G343800 Sobic002G343800 Sobic008G024600--Sobic002G343800 Sobic008G024600--Sobic003G280800 Sobic005G045300 Sobic005G045300 Sobic008G024600--Sobic005G045300 Sobic002G053000--Sobic008G024600 Sobic002G053000--Sobic003G280800 Sobic002G053000--Sobic006G209850 Sobic002G053000--Sobic006G128900 Sobic009G210500 Sobic009G210500 Sobic002G053000--Sobic009G210500 Sobic002G053000--Sobic010G129200 Sobic002G053000--Sobic003G445400 Sobic007G167500 Sobic007G167500 Sobic002G053000--Sobic007G167500 Sobic002G053000--Sobic005G045300 Sobic010G129200--Sobic005G045300 Sobic005G013200 Sobic005G013200 Sobic010G129200--Sobic005G013200 Sobic009G126400 Sobic009G126400 Sobic010G129200--Sobic009G126400 Sobic010G129200--Sobic008G024600 Sobic010G129200--Sobic006G209850 Sobic001G407200 Sobic001G407200 Sobic010G129200--Sobic001G407200 Sobic010G129200--Sobic002G053000 Sobic010G129200--Sobic010G277500 Sobic010G136600 Sobic010G136600 Sobic010G129200--Sobic010G136600 Sobic004G145500--Sobic007G065400 Sobic008G173900 Sobic008G173900 Sobic004G145500--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic004G145500--Sobic002G144933 Sobic008G009700 Sobic008G009700 Sobic004G145500--Sobic008G009700 Sobic004G145500--Sobic001G306900 Sobic003G200200 Sobic003G200200 Sobic004G145500--Sobic003G200200 Sobic004G145500--Sobic009G210500 Sobic004G145500--Sobic010G136600 Sobic001G241200 Sobic001G241200 Sobic004G145500--Sobic001G241200 Sobic007G096600 Sobic007G096600 Sobic002G243900--Sobic007G096600 Sobic004G007100 Sobic004G007100 Sobic002G243900--Sobic004G007100 Sobic005G144400 Sobic005G144400 Sobic002G243900--Sobic005G144400 Sobic003G148000 Sobic003G148000 Sobic002G243900--Sobic003G148000 Sobic006G048500 Sobic006G048500 Sobic002G243900--Sobic006G048500 Sobic007G178700 Sobic007G178700 Sobic002G243900--Sobic007G178700 Sobic002G243900--Sobic003G268300 Sobic002G145101 Sobic002G145101 Sobic002G243900--Sobic002G145101 Sobic003G176500 Sobic003G176500 Sobic002G243900--Sobic003G176500
Octagon: transcription factors


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