Gene annotation
Transcriptome id Sobic.004G145500.3
Synonym FRA3
Functional annotation endonuclease/exonuclease/phosphatase family domain containing protein, expressed
UniProt A0A1Z5RMN3
Pfam PF03372
Panther DB PTHR11200 PTHR11200:SF133
NCBI CDD KOG0565; Inositol polyphosphate 5-phosphatase and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65580 : Endonuclease/exonuclease/phosphatase family protein
RAP-DB (Rice) LOC_Os08g41270.1 : endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020329
Brachypodium KQJ99485 , KQJ99486
Barley HORVU0Hr1G008620.8 , HORVU0Hr1G008620.9 , HORVU0Hr1G008620.6 , HORVU0Hr1G008620.7 , HORVU0Hr1G008620.2 , HORVU0Hr1G008620.3 , HORVU0Hr1G008620.1 , HORVU0Hr1G008620.10 , HORVU0Hr1G008620.11 , HORVU0Hr1G008620.12
Wheat TraesCS4A02G082700 , TraesCS4D02G221700 , TraesCS4D02G221700 , TraesCS4D02G221700 , TraesCS4B02G221300 , TraesCS4B02G221300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
2 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
3 Sobic.002G144933 - -
4 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
5 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
6 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
7 Sobic.009G210500 expressed protein -
8 Sobic.010G136600 - -
9 Sobic.001G241200 protein kinase domain containing protein, expressed -
10 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
11 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
13 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
14 Sobic.010G277500 expressed protein -
15 Sobic.007G117400 expressed protein -
16 Sobic.001G094000 expressed protein -
17 Sobic.006G209850 - -
18 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
19 Sobic.003G268300 surp module family protein, putative, expressed -
20 Sobic.001G413500 expressed protein -


Gene co-expression network
sample Sobic004G145500 Sobic004G145500 Sobic007G065400 Sobic007G065400 Sobic004G145500--Sobic007G065400 Sobic008G173900 Sobic008G173900 Sobic004G145500--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic004G145500--Sobic002G144933 Sobic008G009700 Sobic008G009700 Sobic004G145500--Sobic008G009700 Sobic001G306900 Sobic001G306900 Sobic004G145500--Sobic001G306900 Sobic003G200200 Sobic003G200200 Sobic004G145500--Sobic003G200200 Sobic009G210500 Sobic009G210500 Sobic004G145500--Sobic009G210500 Sobic010G136600 Sobic010G136600 Sobic004G145500--Sobic010G136600 Sobic001G241200 Sobic001G241200 Sobic004G145500--Sobic001G241200 Sobic002G006900 Sobic002G006900 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic007G065400--Sobic008G009700 Sobic009G040600 Sobic009G040600 Sobic007G065400--Sobic009G040600 Sobic007G065400--Sobic004G145500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic002G157000 Sobic002G157000 Sobic008G173900--Sobic002G157000 Sobic008G173900--Sobic002G144933 Sobic001G420200 Sobic001G420200 Sobic008G173900--Sobic001G420200 Sobic003G268300 Sobic003G268300 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic001G274200 Sobic001G274200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic007G096600 Sobic007G096600 Sobic008G173900--Sobic007G096600 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic002G144933--Sobic001G420200 Sobic002G144933--Sobic003G268300 Sobic002G144933--Sobic001G274200 Sobic007G037900 Sobic007G037900 Sobic002G144933--Sobic007G037900 Sobic002G144933--Sobic004G145500 Sobic003G170100 Sobic003G170100 Sobic002G144933--Sobic003G170100 Sobic009G065100 Sobic009G065100 Sobic002G144933--Sobic009G065100 Sobic002G309600 Sobic002G309600 Sobic008G009700--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic008G009700--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic008G009700--Sobic005G112300 Sobic008G009700--Sobic007G065400 Sobic002G071500 Sobic002G071500 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic002G153700 Sobic002G153700 Sobic008G009700--Sobic002G153700 Sobic010G065300 Sobic010G065300 Sobic008G009700--Sobic010G065300 Sobic008G009700--Sobic001G241200 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic001G306900--Sobic004G145500 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G094000 Sobic001G094000 Sobic001G306900--Sobic001G094000 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic003G200200--Sobic007G096600 Sobic002G248400 Sobic002G248400 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G200200--Sobic003G170100 Sobic002G320500 Sobic002G320500 Sobic009G210500--Sobic002G320500 Sobic009G210500--Sobic007G065400 Sobic009G210500--Sobic002G157000 Sobic006G032400 Sobic006G032400 Sobic009G210500--Sobic006G032400 Sobic009G210500--Sobic003G268300 Sobic001G407200 Sobic001G407200 Sobic009G210500--Sobic001G407200 Sobic007G167500 Sobic007G167500 Sobic009G210500--Sobic007G167500 Sobic001G090400 Sobic001G090400 Sobic009G210500--Sobic001G090400 Sobic009G210500--Sobic004G145500 Sobic010G136600--Sobic007G096600 Sobic010G136600--Sobic004G145500 Sobic010G136600--Sobic002G144933 Sobic010G136600--Sobic008G173900 Sobic010G136600--Sobic008G028700 Sobic009G126400 Sobic009G126400 Sobic010G136600--Sobic009G126400 Sobic010G277500 Sobic010G277500 Sobic010G136600--Sobic010G277500 Sobic010G136600--Sobic009G210500 Sobic004G009600 Sobic004G009600 Sobic010G136600--Sobic004G009600 Sobic007G117400 Sobic007G117400 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic001G241200--Sobic005G008800 Sobic001G241200--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic001G241200--Sobic001G154900 Sobic001G241200--Sobic003G119000 Sobic001G540400 Sobic001G540400 Sobic001G241200--Sobic001G540400
Octagon: transcription factors


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