Gene annotation
Transcriptome id Sobic.001G347300.3,Sobic.001G347300.1,Sobic.001G347300.4
Synonym Sb01g033290
Functional annotation splicing factor, arginine/serine-rich 16, putative, expressed
UniProt A0A1Z5S952 , A0A1Z5S966 , A0A1B6QMS3
Pfam PF09750
Panther DB PTHR13161
NCBI CDD KOG2548; SWAP mRNA splicing regulator
KEGG Orthology K13168; splicing factor, arginine/serine-rich 16
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G36980 : -
RAP-DB (Rice) LOC_Os03g27840.1 : splicing factor, arginine/serine-rich 16, putative, expressed
MaizeGDB (Corn) Zm00025a002764
Brachypodium KQK21387
Barley HORVU4Hr1G039020.23 , HORVU4Hr1G039020.22 , HORVU4Hr1G039020.21 , HORVU4Hr1G039020.20 , HORVU4Hr1G039020.25 , HORVU4Hr1G039020.24 , HORVU4Hr1G039020.12 , HORVU4Hr1G039020.13 , HORVU4Hr1G039020.10 , HORVU4Hr1G039020.11 , HORVU4Hr1G039020.16 , HORVU4Hr1G039020.17 , HORVU4Hr1G039020.14 , HORVU4Hr1G039020.15 , HORVU4Hr1G039020.18 , HORVU4Hr1G039020.19 , HORVU4Hr1G039020.9 , HORVU4Hr1G039020.2 , HORVU4Hr1G039020.3 , HORVU4Hr1G039020.4 , HORVU4Hr1G039020.5 , HORVU4Hr1G039020.6 , HORVU4Hr1G039020.7 , HORVU4Hr1G039020.8 , HORVU4Hr1G039020.1
Wheat TraesCS4A02G149000 , TraesCS4D02G149700 , TraesCS4B02G164500 , TraesCS4B02G164500 , TraesCS4A02G149000 , TraesCS4B02G164500 , TraesCS4B02G164500 , TraesCS4B02G164500
Populus -


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cDNA sequences
Sobic.001G347300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
2 Sobic.002G145101 - -
3 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
4 Sobic.002G243900 - -
5 Sobic.003G108700 RNA recognition motif, putative, expressed -
6 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
7 Sobic.006G251900 - -
8 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
9 Sobic.003G170100 - -
10 Sobic.008G028700 SET domain containing protein, expressed -
11 Sobic.007G167500 expressed protein -
12 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
13 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
14 Sobic.002G191800 - -
15 Sobic.002G180666 - -
16 Sobic.007G096600 - -
17 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
18 Sobic.003G268300 surp module family protein, putative, expressed -
19 Sobic.002G248400 ENT domain containing protein, expressed -
20 Sobic.002G380500 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2


Gene co-expression network
sample Sobic001G347300 Sobic001G347300 Sobic007G126600 Sobic007G126600 Sobic001G347300--Sobic007G126600 Sobic002G145101 Sobic002G145101 Sobic001G347300--Sobic002G145101 Sobic007G065400 Sobic007G065400 Sobic001G347300--Sobic007G065400 Sobic002G243900 Sobic002G243900 Sobic001G347300--Sobic002G243900 Sobic003G108700 Sobic003G108700 Sobic001G347300--Sobic003G108700 Sobic001G511500 Sobic001G511500 Sobic001G347300--Sobic001G511500 Sobic006G251900 Sobic006G251900 Sobic001G347300--Sobic006G251900 Sobic003G200200 Sobic003G200200 Sobic001G347300--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic001G347300--Sobic003G170100 Sobic008G192600 Sobic008G192600 Sobic007G126600--Sobic008G192600 Sobic003G119000 Sobic003G119000 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic002G006900 Sobic002G006900 Sobic007G126600--Sobic002G006900 Sobic007G126600--Sobic003G108700 Sobic007G126600--Sobic001G347300 Sobic001G241200 Sobic001G241200 Sobic007G126600--Sobic001G241200 Sobic003G148000 Sobic003G148000 Sobic002G145101--Sobic003G148000 Sobic006G048500 Sobic006G048500 Sobic002G145101--Sobic006G048500 Sobic002G180666 Sobic002G180666 Sobic002G145101--Sobic002G180666 Sobic002G145101--Sobic002G243900 Sobic008G028700 Sobic008G028700 Sobic002G145101--Sobic008G028700 Sobic004G007100 Sobic004G007100 Sobic002G145101--Sobic004G007100 Sobic006G079400 Sobic006G079400 Sobic002G145101--Sobic006G079400 Sobic006G032500 Sobic006G032500 Sobic002G145101--Sobic006G032500 Sobic005G144400 Sobic005G144400 Sobic002G145101--Sobic005G144400 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic009G040600 Sobic009G040600 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic007G065400--Sobic008G028700 Sobic007G096600 Sobic007G096600 Sobic002G243900--Sobic007G096600 Sobic002G243900--Sobic004G007100 Sobic002G243900--Sobic005G144400 Sobic002G243900--Sobic003G148000 Sobic002G243900--Sobic006G048500 Sobic007G178700 Sobic007G178700 Sobic002G243900--Sobic007G178700 Sobic003G268300 Sobic003G268300 Sobic002G243900--Sobic003G268300 Sobic002G243900--Sobic002G145101 Sobic003G176500 Sobic003G176500 Sobic002G243900--Sobic003G176500 Sobic002G248400 Sobic002G248400 Sobic003G108700--Sobic002G248400 Sobic002G157000 Sobic002G157000 Sobic003G108700--Sobic002G157000 Sobic003G108700--Sobic003G268300 Sobic004G257400 Sobic004G257400 Sobic003G108700--Sobic004G257400 Sobic003G108700--Sobic007G126600 Sobic001G420200 Sobic001G420200 Sobic003G108700--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic003G108700--Sobic008G173900 Sobic003G108700--Sobic003G200200 Sobic007G167500 Sobic007G167500 Sobic003G108700--Sobic007G167500 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic006G251900--Sobic001G347300 Sobic006G251900--Sobic007G126600 Sobic009G083400 Sobic009G083400 Sobic006G251900--Sobic009G083400 Sobic006G251900--Sobic003G108700 Sobic006G251900--Sobic001G511500 Sobic004G216500 Sobic004G216500 Sobic006G251900--Sobic004G216500 Sobic002G127100 Sobic002G127100 Sobic006G251900--Sobic002G127100 Sobic006G251900--Sobic008G192600 Sobic003G038500 Sobic003G038500 Sobic006G251900--Sobic003G038500 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G200200--Sobic003G170100 Sobic005G110472 Sobic005G110472 Sobic003G170100--Sobic005G110472 Sobic003G170100--Sobic003G268300 Sobic003G170100--Sobic003G200200 Sobic003G170100--Sobic007G096600 Sobic002G144933 Sobic002G144933 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic007G137900 Sobic007G137900 Sobic003G170100--Sobic007G137900 Sobic001G162300 Sobic001G162300 Sobic003G170100--Sobic001G162300
Octagon: transcription factors


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