Gene annotation
Transcriptome id Sobic.006G251900.1
Synonym Sb06g031685
Functional annotation -
UniProt A0A1Z5RFY4
Pfam PF15996
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G70620 : cyclin-related
RAP-DB (Rice) LOC_Os04g56630.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a009434 , Zm00025a053276
Brachypodium PNT62069 , KQJ85119 , KQJ85118 , KQJ85117 , KQJ85116 , PNT62070 , KQJ85120
Barley -
Wheat TraesCS2A02G496100 , TraesCS2A02G496100 , TraesCS2A02G496100 , TraesCS2A02G496100 , TraesCS2A02G496100 , TraesCS2A02G496100 , TraesCS2A02G496100 , TraesCS2B02G524400 , TraesCS2B02G524400 , TraesCS2B02G524400 , TraesCS2B02G524400 , TraesCS2B02G524400 , TraesCS2A02G496100 , TraesCS2D02G496400 , TraesCS2D02G496400 , TraesCS2D02G496400
Populus -


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cDNA sequences
Sobic.006G251900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G347300 splicing factor, arginine/serine-rich 16, putative, expressed K13168: splicing factor, arginine/serine-rich 16
2 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
3 Sobic.009G083400 RNA recognition motif family protein, expressed -
4 Sobic.003G108700 RNA recognition motif, putative, expressed -
5 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
6 Sobic.004G216500 hypothetical protein -
7 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
8 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
9 Sobic.003G038500 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
10 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
11 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
12 Sobic.004G213000 AT hook motif family protein, expressed -
13 Sobic.002G278000 endonuclease/exonuclease/phosphatase family protein, putative, expressed K10772: AP endonuclease 2
14 Sobic.003G109500 expressed protein -
15 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
16 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
17 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.006G032400 expressed protein -
19 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
20 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11


Gene co-expression network
sample Sobic006G251900 Sobic006G251900 Sobic001G347300 Sobic001G347300 Sobic006G251900--Sobic001G347300 Sobic007G126600 Sobic007G126600 Sobic006G251900--Sobic007G126600 Sobic009G083400 Sobic009G083400 Sobic006G251900--Sobic009G083400 Sobic003G108700 Sobic003G108700 Sobic006G251900--Sobic003G108700 Sobic001G511500 Sobic001G511500 Sobic006G251900--Sobic001G511500 Sobic004G216500 Sobic004G216500 Sobic006G251900--Sobic004G216500 Sobic002G127100 Sobic002G127100 Sobic006G251900--Sobic002G127100 Sobic008G192600 Sobic008G192600 Sobic006G251900--Sobic008G192600 Sobic003G038500 Sobic003G038500 Sobic006G251900--Sobic003G038500 Sobic001G347300--Sobic007G126600 Sobic002G145101 Sobic002G145101 Sobic001G347300--Sobic002G145101 Sobic007G065400 Sobic007G065400 Sobic001G347300--Sobic007G065400 Sobic002G243900 Sobic002G243900 Sobic001G347300--Sobic002G243900 Sobic001G347300--Sobic003G108700 Sobic001G347300--Sobic001G511500 Sobic001G347300--Sobic006G251900 Sobic003G200200 Sobic003G200200 Sobic001G347300--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic001G347300--Sobic003G170100 Sobic007G126600--Sobic008G192600 Sobic003G119000 Sobic003G119000 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic002G006900 Sobic002G006900 Sobic007G126600--Sobic002G006900 Sobic007G126600--Sobic003G108700 Sobic007G126600--Sobic001G347300 Sobic001G241200 Sobic001G241200 Sobic007G126600--Sobic001G241200 Sobic009G083400--Sobic006G251900 Sobic010G224300 Sobic010G224300 Sobic009G083400--Sobic010G224300 Sobic009G083400--Sobic002G127100 Sobic007G004000 Sobic007G004000 Sobic009G083400--Sobic007G004000 Sobic004G102000 Sobic004G102000 Sobic009G083400--Sobic004G102000 Sobic009G083400--Sobic004G216500 Sobic006G161000 Sobic006G161000 Sobic009G083400--Sobic006G161000 Sobic002G278000 Sobic002G278000 Sobic009G083400--Sobic002G278000 Sobic009G083400--Sobic001G347300 Sobic002G248400 Sobic002G248400 Sobic003G108700--Sobic002G248400 Sobic002G157000 Sobic002G157000 Sobic003G108700--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic003G108700--Sobic003G268300 Sobic004G257400 Sobic004G257400 Sobic003G108700--Sobic004G257400 Sobic003G108700--Sobic007G126600 Sobic001G420200 Sobic001G420200 Sobic003G108700--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic003G108700--Sobic008G173900 Sobic003G108700--Sobic003G200200 Sobic007G167500 Sobic007G167500 Sobic003G108700--Sobic007G167500 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic008G054500 Sobic008G054500 Sobic004G216500--Sobic008G054500 Sobic004G216500--Sobic007G126600 Sobic004G216500--Sobic001G511500 Sobic004G216500--Sobic003G119000 Sobic009G138800 Sobic009G138800 Sobic004G216500--Sobic009G138800 Sobic004G216500--Sobic003G108700 Sobic004G216500--Sobic008G192600 Sobic004G216500--Sobic007G167500 Sobic001G107900 Sobic001G107900 Sobic004G216500--Sobic001G107900 Sobic002G127100--Sobic001G347300 Sobic002G127100--Sobic006G251900 Sobic002G127100--Sobic007G126600 Sobic002G127100--Sobic003G108700 Sobic008G113100 Sobic008G113100 Sobic002G127100--Sobic008G113100 Sobic007G146900 Sobic007G146900 Sobic002G127100--Sobic007G146900 Sobic002G127100--Sobic004G257400 Sobic005G021500 Sobic005G021500 Sobic002G127100--Sobic005G021500 Sobic001G088100 Sobic001G088100 Sobic002G127100--Sobic001G088100 Sobic008G192600--Sobic007G126600 Sobic008G192600--Sobic001G241200 Sobic008G192600--Sobic009G026500 Sobic008G192600--Sobic002G404700 Sobic008G192600--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic008G192600--Sobic003G372700 Sobic007G117400 Sobic007G117400 Sobic008G192600--Sobic007G117400 Sobic008G192600--Sobic009G138800 Sobic004G314000 Sobic004G314000 Sobic008G192600--Sobic004G314000 Sobic010G209400 Sobic010G209400 Sobic003G038500--Sobic010G209400 Sobic003G038500--Sobic007G126600 Sobic003G422300 Sobic003G422300 Sobic003G038500--Sobic003G422300 Sobic003G038500--Sobic004G257400 Sobic007G026300 Sobic007G026300 Sobic003G038500--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic003G038500--Sobic001G090400 Sobic003G038500--Sobic003G119000 Sobic003G038500--Sobic002G248400 Sobic003G038500--Sobic001G511500
Octagon: transcription factors


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